Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              36   2e-04
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    34   0.001
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    34   0.001
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.15 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   3.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   3.3  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   4.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = +3

Query: 330 TLSIRDIQENDAGWYQCQVLMSISNKIAAEVELQVRRPPIISDNSTRSIVASEGXSVQME 509
           TLSI +IQ+ + G+Y C+ +  I   ++A + + V+ PP   +   ++  A  G    ++
Sbjct: 739 TLSINNIQKTNEGYYLCEAVNGIGAGLSAVIFISVQAPPHF-EIKLKNQTARRGEPAVLQ 797

Query: 510 CYA 518
           C A
Sbjct: 798 CEA 800



 Score = 25.8 bits (54), Expect = 0.27
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +3

Query: 330 TLSIRDIQE-NDAGWYQCQVLMSISNKIAAEVELQVRRPPIISDNSTRSIVASEGXSVQM 506
           TL I +++  +D   Y C    +        +E+QV  PP I   S   +  + G    +
Sbjct: 544 TLIIENVERMSDQATYTCVARNAQGYSARGTLEVQVMVPPTIQQFSFTKLPMNAGEFANL 603

Query: 507 EC 512
           +C
Sbjct: 604 QC 605



 Score = 24.2 bits (50), Expect = 0.82
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 330  TLSIRDIQENDAGWYQCQVLMSISNKIAAEVELQVRRPP 446
            +L I+++   DAG Y C V  +  +      +L V  PP
Sbjct: 1330 SLFIKEVDRTDAGEYSCYVENTFGHDTVTH-QLIVHAPP 1367



 Score = 23.8 bits (49), Expect = 1.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 330 TLSIRDIQENDAGWYQCQVLMSISNKIAAEVELQVRRP 443
           TL IR+ +  D+G Y C V  S+  + + E  L V  P
Sbjct: 271 TLIIREARVEDSGKYLCIVNNSVGGE-SVETVLTVTAP 307


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +3

Query: 330 TLSIRDIQENDAGWYQCQVLMSISNKIAAEVELQVRRPPIISDNSTRSIVASEGXSVQME 509
           TL ++ ++E+  G+Y CQ    I + I   V+L+V   P  +  S R +   +G +  + 
Sbjct: 770 TLLLQHVKEDREGFYLCQASNGIGSGIGKVVQLKVNSSPYFAAPS-RLVTVKKGDTATLH 828

Query: 510 C 512
           C
Sbjct: 829 C 829



 Score = 31.1 bits (67), Expect = 0.007
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = +3

Query: 333 LSIRDIQENDAGWYQCQVLMSISNKIAAEVELQVRRPPIISDNSTRSIVASEGXSVQMEC 512
           L +  I   D G YQC V  S  +   A  ELQ+   P +   S        G +V ++C
Sbjct: 384 LRLNGINREDRGMYQCIVRRSEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAVSLKC 443

Query: 513 YA 518
            A
Sbjct: 444 SA 445



 Score = 23.4 bits (48), Expect = 1.4
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 297  SLRHDEATATFTLSIRDIQENDAGWYQCQVLMSISNKIAAEVELQVRRPP 446
            S R+ +   +  L + ++Q  D G Y CQV  +  N       L V+ PP
Sbjct: 1357 STRNIQILPSGELMLSNLQSQDGGDYTCQVENAQGND-KLHYTLTVQVPP 1405


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +3

Query: 330 TLSIRDIQENDAGWYQCQVLMSISNKIAAEVELQVRRPPIISDNSTRSIVASEGXSVQME 509
           TL ++ ++E+  G+Y CQ    I + I   V+L+V   P  +  S R +   +G +  + 
Sbjct: 766 TLLLQHVKEDREGFYLCQASNGIGSGIGKVVQLKVNSSPYFAAPS-RLVTVKKGDTATLH 824

Query: 510 C 512
           C
Sbjct: 825 C 825



 Score = 31.1 bits (67), Expect = 0.007
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = +3

Query: 333 LSIRDIQENDAGWYQCQVLMSISNKIAAEVELQVRRPPIISDNSTRSIVASEGXSVQMEC 512
           L +  I   D G YQC V  S  +   A  ELQ+   P +   S        G +V ++C
Sbjct: 384 LRLNGINREDRGMYQCIVRRSEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAVSLKC 443

Query: 513 YA 518
            A
Sbjct: 444 SA 445



 Score = 23.4 bits (48), Expect = 1.4
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 297  SLRHDEATATFTLSIRDIQENDAGWYQCQVLMSISNKIAAEVELQVRRPP 446
            S R+ +   +  L + ++Q  D G Y CQV  +  N       L V+ PP
Sbjct: 1353 STRNIQILPSGELMLSNLQSQDGGDYTCQVENAQGND-KLHYTLTVQVPP 1401


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 51  NIYVFYTLL--LYFTCNVSAQRTPTISHITQEQIRDIGGQVDLECSVHYAQEFPVVWTK 221
           N+  FY     LY    VS  ++  ++HI+      +G  V+++C V      P+VW +
Sbjct: 292 NVNEFYMAFSKLYSVSVVSLDKSLEVNHISAR----VGDNVEIKCDVTGTPPPPLVWRR 346


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/54 (16%), Positives = 21/54 (38%)
 Frame = +1

Query: 4   GLIKKSFFV*RTKWIEIFTFFTLYYCISLVMYQPNGHQQSRTSHKSRSGISEAR 165
           GL+  S+ V    W+     F + Y    ++     H+++      +  ++  R
Sbjct: 210 GLLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMNVASLR 263


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/54 (16%), Positives = 21/54 (38%)
 Frame = +1

Query: 4   GLIKKSFFV*RTKWIEIFTFFTLYYCISLVMYQPNGHQQSRTSHKSRSGISEAR 165
           GL+  S+ V    W+     F + Y    ++     H+++      +  ++  R
Sbjct: 86  GLLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMNVASLR 139


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 333 LSIRDIQENDAGWYQCQ 383
           + I    + DAG+Y+CQ
Sbjct: 85  MEIDPATQKDAGYYECQ 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,511
Number of Sequences: 438
Number of extensions: 3702
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)