Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40070.1 68415.m04923 expressed protein                             35   0.038
At3g21790.1 68416.m02748 UDP-glucoronosyl/UDP-glucosyl transfera...    29   1.9  
At5g07410.1 68418.m00848 pectinesterase family protein contains ...    29   2.5  
At3g14180.1 68416.m01792 expressed protein similar to 6b-interac...    28   3.3  
At3g05820.1 68416.m00653 beta-fructofuranosidase, putative / inv...    28   3.3  
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR...    28   3.3  
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR...    28   3.3  
At1g11540.1 68414.m01325 expressed protein  contains Pfam profil...    28   4.4  
At2g25370.1 68415.m03037 zinc finger protein-related contains we...    27   5.8  
At4g29680.1 68417.m04228 type I phosphodiesterase/nucleotide pyr...    27   7.7  

>At2g40070.1 68415.m04923 expressed protein
          Length = 607

 Score = 34.7 bits (76), Expect = 0.038
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
 Frame = +1

Query: 259 RPTPGSSSRTLGS-RCATTRQRPHLRSP--SGIFKRTTPAGTSAKC*CP*ATRSPLKWSS 429
           +PTP S S +L S R   T  +P   +   +G   R+TP+ T+ K   P  + +PL  S+
Sbjct: 234 KPTPMSRSTSLSSSRLTPTASKPTTSTARSAGSVTRSTPS-TTTKSAGPSRSTTPLSRST 292

Query: 430 -RSGGPPSYRTIPPGQS 477
            RS  P S  T+PP ++
Sbjct: 293 ARSSTPTSRPTLPPSKT 309


>At3g21790.1 68416.m02748 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 495

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = -2

Query: 448 MGGLLT---WSSTSAAILLLMDISTWHWYQPASFS*ISLMESVNVAV--ASSWRSENLES 284
           +GG +T   W+ST  ++   +  + W  Y    F+   ++E + +AV     WR E+L  
Sbjct: 362 IGGFVTHCGWNSTLESLWFGVPTAAWPLYAEQKFNAFLMVEELGLAVEIRKYWRGEHLAG 421

Query: 283 L 281
           L
Sbjct: 422 L 422


>At5g07410.1 68418.m00848 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 361

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = -1

Query: 314 LVVAQREPRVLDDEPGVGRQGYRFDRLQTIAFGPDNRKLLSIMHGTFQVYLASD 153
           LV A+  PR+++  P  G      D ++++  G   R ++ + HG ++  +  D
Sbjct: 57  LVAAEAAPRIINVNPKGGEFKTLTDAIKSVPAGNTKRVIIKMAHGEYREKVTID 110


>At3g14180.1 68416.m01792 expressed protein similar to
           6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum]
           GI:18149189
          Length = 443

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +1

Query: 433 SGGPPSYRTIPPGQSS 480
           S GPPSY   PPG SS
Sbjct: 32  SAGPPSYSLTPPGNSS 47


>At3g05820.1 68416.m00653 beta-fructofuranosidase, putative /
           invertase, putative / saccharase, putative /
           beta-fructosidase, putative similar to neutral invertase
           [Daucus carota] GI:4200165; contains Pfam profile
           PF04853: Plant neutral invertase
          Length = 633

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 167 RPGMFRALCSRVSCCLDQTRSFEDDRIDTPVD 262
           R   FR+  SR S C++Q R+ + DRI  P +
Sbjct: 32  RDTSFRSYPSRFSSCINQYRNADSDRIIRPTN 63


>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 27/86 (31%), Positives = 36/86 (41%)
 Frame = +1

Query: 238 RSNRYPCRPTPGSSSRTLGSRCATTRQRPHLRSPSGIFKRTTPAGTSAKC*CP*ATRSPL 417
           R   Y  R    S SR  G   + +R R   RS S    R+     S K     + RSP 
Sbjct: 191 RVREYDSRKDSRSPSR--GRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKS--SRRSPA 246

Query: 418 KWSSRSGGPPSYRTIPPGQSSLAKGK 495
           K +SRS GP S    P  + S ++ +
Sbjct: 247 KSTSRSPGPRSKSRSPSPRRSRSRSR 272


>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 27/86 (31%), Positives = 36/86 (41%)
 Frame = +1

Query: 238 RSNRYPCRPTPGSSSRTLGSRCATTRQRPHLRSPSGIFKRTTPAGTSAKC*CP*ATRSPL 417
           R   Y  R    S SR  G   + +R R   RS S    R+     S K     + RSP 
Sbjct: 191 RVREYDSRKDSRSPSR--GRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKS--SRRSPA 246

Query: 418 KWSSRSGGPPSYRTIPPGQSSLAKGK 495
           K +SRS GP S    P  + S ++ +
Sbjct: 247 KSTSRSPGPRSKSRSPSPRRSRSRSR 272


>At1g11540.1 68414.m01325 expressed protein  contains Pfam profile:
           PF01925 domain of unknown function DUF81
          Length = 367

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 60  VFYTLLLYFTCNVSAQRTPTISHITQEQIRDIGGQ 164
           +F+TL +YF+ NV +  T + S+   EQ   +GG+
Sbjct: 192 IFFTLCIYFSDNVQSNHT-SHSNQNSEQETGVGGR 225


>At2g25370.1 68415.m03037 zinc finger protein-related contains weak
           similarity to zinc fingers and Pfam:PF01485 IBR domain
          Length = 603

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 177 CSVHYAQEFPVVWTKRDRLKTIESIPLSTNAGLIIK 284
           C   +  E  + W KRD++  +  I + T   +I+K
Sbjct: 486 CGYEFCYECGIEWQKRDKVIMMMKIAMMTTQNMIVK 521


>At4g29680.1 68417.m04228 type I phosphodiesterase/nucleotide
           pyrophosphatase family protein similar to SP|P06802
           Ectonucleotide pyrophosphatase/phosphodiesterase 1
           (Plasma-cell membrane glycoprotein PC-1) [Includes:
           Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide
           pyrophosphatase (EC 3.6.1.9) {Mus musculus}; contains
           Pfam profile PF01663: Type I phosphodiesterase /
           nucleotide pyrophosphatase
          Length = 496

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 43  WIEIFTFFTLYYCISLVMYQPNGHQQSRTSHKSRSGISEAR 165
           WI+I + +  YY   L +  P+GH  +    K   G+S  +
Sbjct: 338 WIKIPSSWVQYYTPLLAIQPPSGHDAADIVAKINEGLSSGK 378


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,794,346
Number of Sequences: 28952
Number of extensions: 290563
Number of successful extensions: 804
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)