Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304G11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 0.73
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 27 1.3
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.7
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 27 1.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.7
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al... 27 2.2
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 27 2.2
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 27 2.2
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac... 26 3.0
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 26 3.0
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe... 25 5.2
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 25 5.2
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 25 5.2
SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi... 25 6.8
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 28.3 bits (60), Expect = 0.73
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 277 PASIVVSVS*PTLKCMP-SFRHEYSTPLSSPSVAHSSLVACPSLNNTSAGASLRTGT 110
P+S++ S S + +P S STP++ S + SS S N T+ G++ TG+
Sbjct: 230 PSSVISSASLSSSSVLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTTTGS 286
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 157 DRPR-GWSAPQRETTVVSNTRGEKTACILASVKTRSPLS 270
D+PR WS + + +S+T AC +AS++T++PL+
Sbjct: 128 DKPRLVWSQNRISDSFLSSTISSD-ACFIASIETKNPLA 165
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 27.1 bits (57), Expect = 1.7
Identities = 26/72 (36%), Positives = 35/72 (48%)
Frame = +1
Query: 148 SERDRPRGWSAPQRETTVVSNTRGEKTACILASVKTRSPLSTLALLCSAKPKLRTKASTS 327
S+R +P SA T ++ G + A +SVK S +ST AKPK +
Sbjct: 330 SKRIKPTEGSANLNTVTELTGI-GSRIAMNGSSVKA-SNISTEKSKTIAKPK----PAKE 383
Query: 328 ASPKATLGSPAQ 363
SP+ATL SP Q
Sbjct: 384 LSPQATLNSPIQ 395
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = -1
Query: 275 SVDSGERVLTDAKMHA-VFS---PRVFDTTVVSLCGALQPRGLSLSEQYLGRCLLENGN 111
S S + VL ++K A +F+ P+V + V + ++ P+ +SL E L + ++ GN
Sbjct: 51 STSSNDTVLYESKNGARIFTLNRPKVLNAINVDMIDSILPKLVSLEESNLAKVIILKGN 109
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 1.7
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = -2
Query: 277 PASIVVSVS*PTLKCMPSFRHEYSTPLSSPSVAHSSLVACPSLNNTSAGASLRTGT 110
PA+ + SV PTL + + Y+T +S S SS A SL ++S+ AS T +
Sbjct: 45 PATYLSSV--PTLLKRATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNS 98
>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 26.6 bits (56), Expect = 2.2
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -1
Query: 212 VFDTTVVSLCGALQPRGLSLSEQYLGRCLLENGNLVPGIN---GLPRS 78
VF+TT+ L G L LS + YL R + L+ N GLPRS
Sbjct: 128 VFETTIRILGGLLSSYHLSQDKLYLDRAVDLADRLLAAYNTSTGLPRS 175
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -2
Query: 202 PLSSPSVAHSSLVACPSLNNTSAGASLRTGTLSPELTGCPVV*ITHVPK 56
P+S+P + PSL + G T ++SP PV+ T PK
Sbjct: 320 PISAPKKQEFGVSLPPSLASPEKGGISSTTSVSPAAQASPVLSTTTQPK 368
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -2
Query: 208 STPLSSPSVAHSSLVACPSLNNTSAGASLRTGTLSPELTGCP 83
STP+++ + S + P L T A A+ ++PE + P
Sbjct: 205 STPVNASTDTRKSTASTPQLQQTQAQANAPQQRINPETSSVP 246
>SPAC11D3.03c |||meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 400 GVSMYVRRSLVALVLATPKSLLAKHWYSPSSEALVWLNTREPASIVV 260
G +Y + L A + PK L+ +H P + V + + SIVV
Sbjct: 33 GSPLYADKELYARIANAPKKLVGRHVCQPRTGLAVKIPQKSIFSIVV 79
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 172 WSAPQRETTVVSNTRGEKTACILASVKTRSPLSTLALLCSAKPKLRTKASTSASP-KATL 348
++AP++++ V G+ +L V +PLS+ + +L +A++ +P K+T
Sbjct: 178 FTAPEKDSAEVVEEAGQPEYRLLTEVSNGAPLSSFFTVLELFTELIPEATSKENPFKSTT 237
Query: 349 GSPAQG 366
S G
Sbjct: 238 SSLRPG 243
>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 238 KCMPSFRHEYSTPLSSPSVAHSSLVACPSLNNTSAGAS 125
KC+P ++ P S+ S ++ PSL NT +S
Sbjct: 99 KCLPKHARYHNAPKWRSSLMDSEILHNPSLANTHLDSS 136
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 203 TTVVSLCGALQPRGLSLSEQYLGRCLLE 120
T + S CG L P+ + L+E+Y L E
Sbjct: 38 TKIPSECGLLTPKEIELTEKYDATALAE 65
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.4 bits (53), Expect = 5.2
Identities = 27/92 (29%), Positives = 42/92 (45%)
Frame = -2
Query: 358 LATPKSLLAKHWYSPSSEALVWLNTREPASIVVSVS*PTLKCMPSFRHEYSTPLSSPSVA 179
LAT S+ + + PS E+ V+ R +S+ V+ P L F S PL+S +
Sbjct: 832 LATENSVPSYGFEVPSEES-VYAQARTNSSVSAGVA-PRL-----FIQTPSIPLASSAGQ 884
Query: 178 HSSLVACPSLNNTSAGASLRTGTLSPELTGCP 83
S+L+ S A +G LS + +G P
Sbjct: 885 DSNLIEKSSSGGVYASQPGASGYLSHDQSGSP 916
>SPAC29B12.11c |||human WW domain binding protein-2
ortholog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 365 PCAGDPKVAFGEALVLAFVRSFGLAEHKRASVDSGERV 252
PC + K+ F E + FV ++ + VDS RV
Sbjct: 108 PCEAEVKLQFNEGGIFNFVEAWNRLIQRFQEVDSVSRV 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,005
Number of Sequences: 5004
Number of extensions: 47691
Number of successful extensions: 155
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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