Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304G11f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 35 0.046
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 31 0.74
04_04_1569 - 34486005-34486303,34486386-34486928,34487382-344877... 31 0.74
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790... 29 2.3
07_03_0283 + 16241231-16241625,16241774-16241783 29 3.0
02_05_0817 + 31994241-31995908 28 4.0
11_06_0416 + 23307984-23308281,23310083-23310900 28 5.2
06_03_0585 - 22528082-22530100 28 5.2
06_03_0580 + 22489184-22491202 28 5.2
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783... 28 5.2
07_03_0341 - 16956199-16956687 27 6.9
03_03_0108 + 14514460-14515722 27 6.9
11_06_0653 + 25911162-25911272,25911648-25911694,25912877-259133... 27 9.1
11_05_0077 - 18866707-18867334,18867410-18867555 27 9.1
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624... 27 9.1
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 34.7 bits (76), Expect = 0.046
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Frame = -1
Query: 368 SPCAGDPKVAFGEALVLAFVRSFGLAEHKRA-------SVDSGERVLTDAKMHAVFSPRV 210
S C+ D K AF A+ + + S LAE + + D G+R+L + + P +
Sbjct: 226 SSCSDDTKTAFA-AVTVPLLYSSSLAEPRSIPSKSMYPTFDVGDRILAEKVSYIFREPEI 284
Query: 209 FDTTVVSLCGALQPRGLSLSEQYLGRCLLENGNLV 105
D + ALQ G S + ++ R + + G+ V
Sbjct: 285 LDIVIFRAPPALQDWGYSSGDVFIKRVVAKAGDYV 319
>11_06_0278 -
21854859-21855101,21855529-21855587,21855684-21855711,
21855812-21856702,21856792-21857011,21857638-21857687,
21863174-21863284,21863379-21863483,21863568-21863693,
21863796-21865187
Length = 1074
Score = 30.7 bits (66), Expect = 0.74
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 356 GDPKVAFGEALVLAFVRSFGLA-EHKRASVDSGERVLTDAKMHAVFSPR 213
GD +AF A A F LA E + ++ G+ L D ++HAVF PR
Sbjct: 85 GDLGIAFTLAKRYAAREQFDLAAEECQRALGRGDADLVDPQLHAVFEPR 133
>04_04_1569 -
34486005-34486303,34486386-34486928,34487382-34487766,
34488450-34488650,34488739-34488951,34489210-34489446
Length = 625
Score = 30.7 bits (66), Expect = 0.74
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 244 TLKCMPSFRHEYSTPLSSPSVAHSSLVACPSLNN 143
T+ CM SF Y++ + P+V H +LV P N+
Sbjct: 442 TVGCMESFDKYYNSKNADPNVLHGALVGGPDAND 475
>03_02_0377 -
7898075-7898605,7900782-7901000,7901079-7901142,
7901226-7901282,7901373-7901471,7901744-7901793,
7902378-7902422,7902967-7903062
Length = 386
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 121 SRRHRPRYCSERDRPRGWSAP--QRETTVVSNTRGEKTACILASVKTRSPLSTLALLCSA 294
S+R + E +P+ AP Q+ T + T ++A I A + S A +
Sbjct: 201 SQRSSQQPSQEPQQPKQQQAPVQQQPTQKQAPTVLRRSASIAARQAAMAQQSQDAKTVPS 260
Query: 295 KPKLRTKASTSASPKAT 345
PK++ +AST A+P A+
Sbjct: 261 SPKIKRQASTKAAPVAS 277
>07_03_0283 + 16241231-16241625,16241774-16241783
Length = 134
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = -2
Query: 187 SVAHSSLVACPSLNNTSAGASLRTGTLSPELTGC 86
+VA ++VAC + ++S+ + L GT++ L+GC
Sbjct: 11 AVAAMAVVACFAATSSSSSSQLHCGTVTSLLSGC 44
>02_05_0817 + 31994241-31995908
Length = 555
Score = 28.3 bits (60), Expect = 4.0
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = -2
Query: 202 PLSSPSVAHSSLVACPSLNNTSAGASLRTGTLSPELTGCPVV*ITHVPKTNNVQE 38
PLSS + AHS+ + P LN TS R L P L + THV N+Q+
Sbjct: 21 PLSSLAAAHSANRSSPRLNPTSVPPPPRQLHL-PTLQARRLCSTTHVVLPTNLQD 74
>11_06_0416 + 23307984-23308281,23310083-23310900
Length = 371
Score = 27.9 bits (59), Expect = 5.2
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Frame = +3
Query: 186 EGDDSGVEYSWRKDGMHF-SVGQDTLTTIDAGSLVFSQTKASDEGEYQCFAKSDFGVAST 362
+GDD G + W +H D + S A+ +G + +SD +
Sbjct: 73 DGDDDGADAGWISIALHLDDPNVDGVRNGVRARFKISLLAAAHDGSHPPPPRSD----QS 128
Query: 363 RATKLRRTYIETPAFEEKKVTVVEGKPFELRCPV 464
AT+ +I A EE V G F LRC V
Sbjct: 129 TATRSFPRFITAKALEESGYLV--GDSFSLRCDV 160
>06_03_0585 - 22528082-22530100
Length = 672
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 175 SAPQRETTVVSNTRGEKTACILASVKTRSP-LSTLALLCSAKPKLRTKASTSASPKATLG 351
+A R+ + ++T G A +L + T SP L T L SA+ + + + ++ P AT G
Sbjct: 38 AAAARDPSAGNDTFGALPAALLRQLSTPSPLLPTRLLSLSAQVPVTVRLAGASFPPAT-G 96
Query: 352 SPAQGLLSSAV 384
+ ++SAV
Sbjct: 97 RLLESFVNSAV 107
>06_03_0580 + 22489184-22491202
Length = 672
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 175 SAPQRETTVVSNTRGEKTACILASVKTRSP-LSTLALLCSAKPKLRTKASTSASPKATLG 351
+A R+ + ++T G A +L + T SP L T L SA+ + + + ++ P AT G
Sbjct: 38 AAAARDPSAGNDTFGALPAALLRQLSTPSPLLPTRLLSLSAQVPVTVRLAGASFPPAT-G 96
Query: 352 SPAQGLLSSAV 384
+ ++SAV
Sbjct: 97 RLLESFVNSAV 107
>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
31678677-31678715
Length = 1885
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 208 STPLSSPSVAHSSLVACPSLNNTSAGA--SLRTGTLSPELTGCPVV 77
+T LS PS+ L+A PSLN S + +L + ++ CPV+
Sbjct: 1021 ATELSIPSLEELVLIALPSLNTCSCTSIRNLNSSLKVLKIKNCPVL 1066
>07_03_0341 - 16956199-16956687
Length = 162
Score = 27.5 bits (58), Expect = 6.9
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = +3
Query: 93 VNSGDKVPVLKEAPAEVLFREGQATR--LECATEGDDSGVEYSWRKDGM---HFSVGQDT 257
+ S VP +PA + E +A R E EGDD G ++S K G+ F V Q+
Sbjct: 13 IMSASPVPHRVPSPAPIDDEEDKAKRKKTEVEVEGDDEGAKHS--KTGLIQRRFKVSQEM 70
Query: 258 LTTIDAGSL 284
L + A L
Sbjct: 71 LDDLMAHPL 79
>03_03_0108 + 14514460-14515722
Length = 420
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 58 WEHVLFTLRGSPLIPGTRFPFSRRHRPR 141
W+ VL RG+PL+ G+R+ H P+
Sbjct: 128 WDGVLCVERGAPLLRGSRWDAGVHHWPK 155
>11_06_0653 +
25911162-25911272,25911648-25911694,25912877-25913355,
25914089-25914249,25914324-25914519,25914745-25914807,
25914898-25915047,25915148-25915494
Length = 517
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 214 EYSTPLSSPSVAHSSLVACPSLNNTSAGASLRTGTLSPELT 92
E+ST LSS + AH++ + L+ S S+ G LSP ++
Sbjct: 451 EHSTGLSSVNGAHNNNINHGGLSAASEAGSVSYGGLSPPVS 491
>11_05_0077 - 18866707-18867334,18867410-18867555
Length = 257
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 155 GTGHEAGVRHRGRRQWC 205
G G EAGVR R R WC
Sbjct: 39 GGGGEAGVRRRTRGTWC 55
>01_01_0802 +
6246267-6247541,6247625-6247682,6247806-6248129,
6248321-6248355
Length = 563
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -2
Query: 472 PPGTGQRSSKGFPSTTVTFFSSNAGVSMYVRRSLVALVLATPKSLLAK 329
PP + +S KG PS SN G+S RR L A V + +LLA+
Sbjct: 112 PPVSKHKSKKGNPS-------SNPGLSAEARRKLYAPVFKSCGALLAR 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,787,890
Number of Sequences: 37544
Number of extensions: 366066
Number of successful extensions: 1436
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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