Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0490 + 4284192-4284740                                           29   2.3  
09_02_0532 + 10320734-10320765,10321260-10321301,10321399-103214...    27   6.9  
08_02_0662 + 19789406-19789546,19789646-19789779,19790272-197904...    27   6.9  
03_05_0330 + 23218018-23218398                                         27   6.9  
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150...    27   9.1  

>08_01_0490 + 4284192-4284740
          Length = 182

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 70  PRQGRGGLRGAPHGVEDSGLLRSSRP 147
           PR+GRGG  G  H V DS   R   P
Sbjct: 133 PREGRGGRGGVIHAVADSAPQRPGSP 158


>09_02_0532 +
           10320734-10320765,10321260-10321301,10321399-10321435,
           10322464-10322733
          Length = 126

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 481 RKSAASEYVPRSLLTDLPSELDMPLDGEDEAEV 383
           R +A    +PR L   +P+E D+  +GEDE EV
Sbjct: 19  RVTAPRRRLPRYLYYRIPTEGDLLSNGEDEHEV 51


>08_02_0662 +
           19789406-19789546,19789646-19789779,19790272-19790476,
           19791233-19791367,19792117-19792746,19793180-19793356,
           19795175-19795198
          Length = 481

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -3

Query: 501 ESSRGNNEKVLLQ--STCQGLS*LTCLPSWT 415
           +  +G++EK  L+  ++CQG + L+C+  WT
Sbjct: 358 DDDKGDDEKATLEEPTSCQGQAELSCVICWT 388


>03_05_0330 + 23218018-23218398
          Length = 126

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 52  GRARVRPRQGRGGLRGAPHGVED 120
           G+  VR R+ RG +RG  HG  D
Sbjct: 98  GKETVRERRERGKIRGPTHGAHD 120


>01_05_0564 +
           23312419-23312987,23314652-23314751,23314832-23315055,
           23315212-23316041,23316161-23316275,23316786-23316905,
           23317410-23317450,23317546-23317595,23317684-23317719,
           23317836-23317856
          Length = 701

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +1

Query: 28  EHLRRISLGRARVRPRQGRGGLRGAPHGVEDSGLLR 135
           EH     + R R R R G G  RG  HG    G  R
Sbjct: 220 EHYEDKRMSRGRFRGRGGGGRTRGTGHGFARGGKYR 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,893,951
Number of Sequences: 37544
Number of extensions: 173036
Number of successful extensions: 487
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)