Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   0.36 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   3.3  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 252 KGTRTEALNLRPSRKGRIT 308
           +  R  ALN++P+ KGRIT
Sbjct: 445 QAVRMSALNVQPTSKGRIT 463


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 137 VHDLGLREFEDDHGTR*NKGNETKSKS 217
           ++D+GL   + D G+  N G+E+  ++
Sbjct: 186 INDIGLNRRDSDDGSDGNDGDESSCRA 212


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +3

Query: 456 TYSEAALFRYFLWNFHPKSM 515
           T+ E ++  ++LW +H K++
Sbjct: 101 TFHEMSIPNHYLWLYHDKTL 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,320
Number of Sequences: 438
Number of extensions: 1496
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)