Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0251 + 14247293-14249926                                         30   1.3  
09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,388...    27   6.9  
03_04_0205 - 18485933-18488446                                         27   9.1  

>01_03_0251 + 14247293-14249926
          Length = 877

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -2

Query: 514 IKNKKNVTFISVFVTLLTFISKIVNRFIIILYFNEFH 404
           I+ KKN+           FISKIV+R III   N FH
Sbjct: 828 IRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFH 864


>09_02_0071 -
           3877231-3877807,3880716-3880722,3880723-3881000,
           3881287-3883916
          Length = 1163

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -2

Query: 514 IKNKKNVTFISVFVTLLTFISKIVNRFIIILYFNEFH 404
           I+ KKN+           FIS IV+R III   N FH
Sbjct: 828 IRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFH 864


>03_04_0205 - 18485933-18488446
          Length = 837

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 472 TLLTFISKIVNRFIIILYFNEFH 404
           T  T ISKIV R II+   N FH
Sbjct: 802 TAFTVISKIVKREIIVRDINRFH 824


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,891,813
Number of Sequences: 37544
Number of extensions: 161480
Number of successful extensions: 195
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)