Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G07f
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    27   0.29 
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    24   2.7  
DQ989011-1|ABK97612.1|  467|Anopheles gambiae gustatory receptor...    23   4.7  
CR954257-13|CAJ14164.1|  420|Anopheles gambiae predicted protein...    23   6.2  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 27.5 bits (58), Expect = 0.29
 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
 Frame = +3

Query: 141 QKDIKKAVTQKQQLDSQLN--ENKAVKEELKLLRKDSEVYKLIGPV-LVKQDLEEARQNV 311
           Q DIKK V + Q+++ +    EN+   E  K          L+     +KQ  +      
Sbjct: 340 QADIKKLVDELQEVEVKRAAFENEVAGESKKRGSNVHLERDLVQEYDRLKQKADATSSKY 399

Query: 312 SKRMEYISKEIKRTDDHICALENKQEALQENLNKLRNDIGKLKLKA*KMCELKVKHFYSS 491
              ++ +++E K   D + +  NK+  ++EN  K+ ++    K +A K  E  + H  +S
Sbjct: 400 LIHLDSVNREQKSDQDRLDSEINKKAQIEENYKKIESE----KNEALKRQEKLIDHIKTS 455


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 306  NVSKRMEYISKEIKRTDDHICALENKQEALQENLNKL 416
            NV +  + I+ +++R  D  CA+   Q  L+E  N+L
Sbjct: 1005 NVCEAAKRITSKLQRCWDDECAILAAQAMLEEPANRL 1041


>DQ989011-1|ABK97612.1|  467|Anopheles gambiae gustatory receptor 22
           protein.
          Length = 467

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 141 QKDIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSE 248
           Q +I+  V    Q   QL + + +KE+L  L +D+E
Sbjct: 10  QYEIRHQVLNPNQRQ-QLEDRRRIKEQLHQLEQDNE 44


>CR954257-13|CAJ14164.1|  420|Anopheles gambiae predicted protein
           protein.
          Length = 420

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
 Frame = +3

Query: 138 VQKDIKKA--VTQKQQLDSQLNENKAVKEELKLLRKD----SEVYKLIGPVLVKQD---- 287
           V+ D+ +A   T KQQ + Q  +    + + + + KD     E+++ I      +     
Sbjct: 98  VELDVPRAERATLKQQYEEQHRKRLEQQSKQRAIEKDRKKKDEIHRQIERERADRSAIDN 157

Query: 288 -LEEARQNVSKRMEYISKEIKRTDDHICALENKQEAL 395
            LEE++Q   KRME    +  R D    +  N  ++L
Sbjct: 158 LLEESKQRELKRMELAMVKQYRPDPAKASAPNAGKSL 194


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 419,333
Number of Sequences: 2352
Number of extensions: 6349
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)