Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              38   0.007
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)                   38   0.007
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)                  38   0.007
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)                38   0.007
SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)           38   0.007
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)                       38   0.007
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.007
SB_4159| Best HMM Match : Vpu (HMM E-Value=2)                          38   0.007
SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)                    36   0.027
SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5)                    33   0.14 
SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)                     33   0.14 
SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  

>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 513 PVNCNTTHYRANW 475
           PVNCNTTHYRANW
Sbjct: 12  PVNCNTTHYRANW 24


>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 513 PVNCNTTHYRANW 475
           PVNCNTTHYRANW
Sbjct: 68  PVNCNTTHYRANW 80


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 513 PVNCNTTHYRANW 475
           PVNCNTTHYRANW
Sbjct: 636 PVNCNTTHYRANW 648


>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 513 PVNCNTTHYRANW 475
           PVNCNTTHYRANW
Sbjct: 47  PVNCNTTHYRANW 59


>SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)
          Length = 257

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 513 PVNCNTTHYRANW 475
           PVNCNTTHYRANW
Sbjct: 9   PVNCNTTHYRANW 21


>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
          Length = 117

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 513 PVNCNTTHYRANW 475
           PVNCNTTHYRANW
Sbjct: 49  PVNCNTTHYRANW 61


>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 513  PVNCNTTHYRANW 475
            PVNCNTTHYRANW
Sbjct: 1887 PVNCNTTHYRANW 1899


>SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 513 PVNCNTTHYRANW 475
           PVNCNTTHYRANW
Sbjct: 47  PVNCNTTHYRANW 59


>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 513 PVNCNTTHYRANW 475
           PVNCNTTHYRANW
Sbjct: 9   PVNCNTTHYRANW 21


>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
          Length = 768

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 513 PVNCNTTHYRANW 475
           PVNCNTTHYRANW
Sbjct: 41  PVNCNTTHYRANW 53


>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 513 PVNCNTTHYRANW 475
           PVNCNTTHYRANW
Sbjct: 90  PVNCNTTHYRANW 102


>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 513 PVNCNTTHYRANW 475
           PVNCNTTHYRANW
Sbjct: 68  PVNCNTTHYRANW 80


>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
          Length = 281

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 513 PVNCNTTHYRANW 475
           PVNCNTTHYRANW
Sbjct: 79  PVNCNTTHYRANW 91


>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 513 PVNCNTTHYRANW 475
           PVNCNTTHYRANW
Sbjct: 55  PVNCNTTHYRANW 67


>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
          Length = 779

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 513 PVNCNTTHYRANW 475
           PVNCNTTHYRANW
Sbjct: 79  PVNCNTTHYRANW 91


>SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)
          Length = 142

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = +1

Query: 454 TRGGARYPIRPIVSRITIHW 513
           T GGA  PIRPIVSRITIHW
Sbjct: 34  TDGGA--PIRPIVSRITIHW 51


>SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5)
          Length = 131

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 16/20 (80%), Positives = 16/20 (80%)
 Frame = +1

Query: 454 TRGGARYPIRPIVSRITIHW 513
           T GGA  PIRPIVS ITIHW
Sbjct: 36  TVGGA--PIRPIVSHITIHW 53


>SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)
          Length = 237

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 513 PVNCNTTHYRAN 478
           PVNCNTTHYRAN
Sbjct: 86  PVNCNTTHYRAN 97


>SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 513 PVNCNTTHYRAN 478
           PVNCNTTHYRAN
Sbjct: 29  PVNCNTTHYRAN 40


>SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 478 IRPIVSRITIHW 513
           IRPIVSRITIHW
Sbjct: 18  IRPIVSRITIHW 29


>SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +1

Query: 478 IRPIVSRITIHW 513
           +RP+VSRITIHW
Sbjct: 33  LRPVVSRITIHW 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,523,807
Number of Sequences: 59808
Number of extensions: 172993
Number of successful extensions: 553
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)