Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304G05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0135 + 1068948-1069730 32 0.24
06_03_0705 - 23707987-23708295,23708532-23708573,23709772-237099... 32 0.24
03_05_0807 + 27849637-27849823,27850002-27850294,27850736-278509... 31 0.74
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 30 1.3
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 30 1.3
07_03_1319 + 25790112-25790283,25790362-25790429 29 1.7
01_06_0461 + 29553709-29554905,29555051-29555296,29555387-295554... 29 1.7
06_03_0741 - 24016204-24016298,24016408-24016525,24016805-240169... 29 2.3
01_06_1320 + 36272716-36273339,36274222-36275762,36276349-362764... 29 2.3
03_03_0244 - 15772156-15773964,15774190-15774711 29 3.0
10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595 28 5.2
02_05_0939 + 32914936-32915055,32916674-32916823,32917160-329173... 27 6.9
12_02_0796 + 23224357-23224427,23225714-23225810,23226335-232271... 27 9.1
01_05_0424 + 22035700-22036215 27 9.1
>08_01_0135 + 1068948-1069730
Length = 260
Score = 32.3 bits (70), Expect = 0.24
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 234 YNYSAPTSPMPVTHKIPSMPKTVSPYGHLRRNMIEIEEK--RNSLNKT 97
Y+YS+ P PV +P P SP+ +RR E R+ LNKT
Sbjct: 32 YSYSSSPPPPPVAFAVPLSPTPPSPHIRMRRAGFRSYEDYLRHQLNKT 79
>06_03_0705 -
23707987-23708295,23708532-23708573,23709772-23709957,
23710112-23710222,23710337-23710408,23710499-23710747,
23711052-23711135,23711271-23711456,23711540-23711764
Length = 487
Score = 32.3 bits (70), Expect = 0.24
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -3
Query: 342 EVRTIQPTRARSLSLEKEGNCHEVKKEVSQTNVKKPYNYSAPTSP--MPVTHKIPSMPKT 169
E T+ +R LSL++ + + VKK + V+KP S P P VT ++ +
Sbjct: 408 EESTVPSSRPARLSLDERASQNGVKKVPAANTVRKPQRKSLPKLPSEQTVTEQVENNTSA 467
Query: 168 VSPYGHLRRNMIEIEEK 118
P L R + +++
Sbjct: 468 TDPVRELIRAQVTPDDQ 484
>03_05_0807 +
27849637-27849823,27850002-27850294,27850736-27850973,
27851075-27851410,27851496-27851581,27851678-27851785,
27851878-27852185,27852265-27852528,27852610-27853381
Length = 863
Score = 30.7 bits (66), Expect = 0.74
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -3
Query: 183 SMPKTVSPYGHLRRNMIEIEEKRNSLNKTGQRNRPLSPSRSDFNYQSTPTSQNEG 19
S PK + + R ++EIE K ++NK + P+ + TS N+G
Sbjct: 793 SDPKALEAFKRFSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKG 847
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 357 PKKEAEVRTIQPTRARSLSLEKEGNCHEVKKEVSQTNVKKPYNYSA 220
PK+ T+Q + + E N H V K+ +++V+KP+ SA
Sbjct: 242 PKQSESSTTVQRSEEGERVTKGESNSHVVSKKPLESSVEKPFQSSA 287
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 29.9 bits (64), Expect = 1.3
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Frame = -3
Query: 270 KKEVSQTNV--KKPYNYSAPT-SPMPVTHKIPSMPKTVSPYGHLR-RNMIEIEEKRNSLN 103
K+ SQT K P SAP +P+P +P++PK S H R + + + S
Sbjct: 277 KESSSQTGTAHKPPIRGSAPAETPLPQNTNMPAVPKNGSSVSHDRPPSTVAAPKPATSSR 336
Query: 102 KTGQRNRPLSPSRSDFNYQSTPTSQNEGP 16
G+ P F S P S +GP
Sbjct: 337 YHGRGGAPKKGEHLPF-APSYPPSHAQGP 364
>07_03_1319 + 25790112-25790283,25790362-25790429
Length = 79
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 249 NVKKPYNYSAPTSPMPVTHKIPSMPKTVSPYGHLRRNMIEIEEKRNSLNK 100
N ++ +S S PV H++ S V P RRN IE EE +N N+
Sbjct: 8 NPRRCCRWSVLRSTSPVGHQVGSRRPPVPPSAAERRNCIE-EEPKNKSNE 56
>01_06_0461 +
29553709-29554905,29555051-29555296,29555387-29555464,
29555557-29555657,29555745-29555940,29556022-29556147,
29556231-29556416,29556921-29557034,29557522-29557674,
29558287-29558475,29558568-29558645,29558728-29558853,
29558942-29559040,29559315-29559432,29559531-29559625
Length = 1033
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = -3
Query: 354 KKEAEVRTIQPTRARSLSLEKEGNCHEVKKEVSQTNVKKPYNYSAPTSPMPVTHKIPSMP 175
K E +R + T +++ ++ +V K N KP N++A + V+ IPS
Sbjct: 469 KNEMNLRVVDATTI-TVAFDETTTLEDVDKLFKVFNGGKPVNFTAESLASEVSSSIPSSL 527
Query: 174 KTVSPY-GHLRRNMIEIEEK 118
SPY H NM E +
Sbjct: 528 VRKSPYLTHPIFNMYHTEHE 547
>06_03_0741 -
24016204-24016298,24016408-24016525,24016805-24016903,
24016992-24017117,24017200-24017277,24017366-24017554,
24018186-24018338,24018785-24018898,24019576-24019761,
24019845-24019970,24020053-24020248,24020338-24020438,
24020533-24020610,24020707-24020952,24021063-24022253
Length = 1031
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = -3
Query: 354 KKEAEVRTIQPTRARSLSLEKEGNCHEVKKEVSQTNVKKPYNYSAPTSPMPVTHKIPSMP 175
K E +R + T +++ ++ +V K N KP N++A + V+ IPS
Sbjct: 467 KNEMNLRVVDATTI-TVAFDETTTLEDVDKLFKVFNGGKPVNFTAESLAPEVSSSIPSSL 525
Query: 174 KTVSPY-GHLRRNMIEIEEK 118
SPY H NM E +
Sbjct: 526 VRKSPYLTHPIFNMYHTEHE 545
>01_06_1320 +
36272716-36273339,36274222-36275762,36276349-36276490,
36276622-36276729,36276814-36277026,36277113-36277223,
36278056-36278250,36278874-36279048,36279189-36279226
Length = 1048
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = -3
Query: 189 IPSMPKTVSP-YGHLRRNMIEIEEKRNSLNKT--GQRNRPLSPSRSDFNYQSTPTSQNEG 19
IP + + +P + + +N+ + RNS N G S + S +YQ +PTS N
Sbjct: 400 IPPISQPSNPSFSDINKNVSGLANIRNSTNTRIDGHAEMQRSSTLSTRSYQKSPTSSNAS 459
Query: 18 P 16
P
Sbjct: 460 P 460
>03_03_0244 - 15772156-15773964,15774190-15774711
Length = 776
Score = 28.7 bits (61), Expect = 3.0
Identities = 28/115 (24%), Positives = 51/115 (44%)
Frame = -3
Query: 366 LISPKKEAEVRTIQPTRARSLSLEKEGNCHEVKKEVSQTNVKKPYNYSAPTSPMPVTHKI 187
+++ RT S+ +E + HE++K+++ + N APT H +
Sbjct: 3 VLNTNDHGTARTRDGEETASVPVENPDSSHEMEKKLTHNLTE---NGQAPTG-----HTV 54
Query: 186 PSMPKTVSPYGHLRRNMIEIEEKRNSLNKTGQRNRPLSPSRSDFNYQSTPTSQNE 22
PS+P TVS + +E +SL + + P S S+++ N S S N+
Sbjct: 55 PSLPDTVS-------KLKPAQESDDSLK--DKTDLPTSTSKTEVNNISENGSTNQ 100
>10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595
Length = 514
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 102 KTGQRNRPLSPSRSDFNYQSTPTSQNEGPRPEEK 1
K+ R+RP SP+ SD Q TP E P P +
Sbjct: 234 KSNSRSRPESPAASDAASQ-TPFRPTESPNPRSR 266
>02_05_0939 + 32914936-32915055,32916674-32916823,32917160-32917305,
32917396-32917552,32917695-32917753,32918180-32918291,
32918901-32919050,32919180-32919316,32919977-32920123,
32920197-32920298,32920674-32920731,32920840-32920941,
32921905-32921942,32922031-32922157,32922228-32922401,
32922542-32922628,32923838-32923947,32924654-32924714,
32925338-32925515,32925628-32925833,32926108-32926227,
32927202-32927423,32927708-32927847,32927976-32928087,
32928254-32928304,32928384-32928473,32928630-32928800,
32928897-32929049,32929860-32930036,32930131-32930268,
32930363-32930433,32930837-32930936,32931156-32931212,
32931301-32931357,32931451-32931531,32931614-32931696,
32931831-32931966
Length = 1459
Score = 27.5 bits (58), Expect = 6.9
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Frame = -3
Query: 342 EVRTIQPTRARSLSLEKEG-NCHEVKKEVSQTNVKKPYNYSAPTSPMPVTHKIPSMPKTV 166
E+ +Q ++ + EKE N + + +S+ N Y ++ T K +
Sbjct: 899 EITMLQGSKIMTAEAEKENSNLKNLVESLSKRNSSLEYELTSARKGSDDTMK--KLKDVE 956
Query: 165 SPYGHLRRNMIEIEEKRNSLNKTGQRNRPLSPSRSDFNYQSTPT 34
HL++N+ +++EK +L R + + S N S T
Sbjct: 957 GKCNHLQQNLDKLQEKLTNLENENHVLRQKALNMSPLNNMSMAT 1000
>12_02_0796 +
23224357-23224427,23225714-23225810,23226335-23227146,
23227593-23227619,23227620-23229624
Length = 1003
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 381 VSTKFLISPKKEAEVRTIQPTRARSLSLEKEGNCHEVKKEVSQTNVKK 238
VSTK SPK ++ + R +L L + C +EVS+ + +
Sbjct: 692 VSTKLRKSPKSIVRLQNLTCLRINNLELPEGIGCMRALQEVSEIKISR 739
>01_05_0424 + 22035700-22036215
Length = 171
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -3
Query: 363 ISPKKEAEVRTIQPTRARS---LSLEKEGNCHEVKKEVSQTNVKKPYNYSAPTSPMP 202
+S EA+ R P R + LE+E +C + + +Q+ + + Y+ P P P
Sbjct: 91 VSVAYEADARADDPVRGAHGVVMDLERELDCLKAELATAQSALARHRQYAQPPPPPP 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,151,193
Number of Sequences: 37544
Number of extensions: 220876
Number of successful extensions: 775
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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