Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G05f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53730| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.33 
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2)                    29   3.1  
SB_19921| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          28   4.1  
SB_31642| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_35489| Best HMM Match : Sec23_BS (HMM E-Value=9.3)                  27   7.1  
SB_39796| Best HMM Match : VWA (HMM E-Value=0)                         27   9.4  
SB_30177| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   9.4  
SB_12499| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_53730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
 Frame = -3

Query: 258 SQTNVKKPYNYSAPTSP-MPVTHKIPSMPKTVSPYGHLRRNMIEIEEKRNSLNKTGQRNR 82
           S  +   P + ++P SP  P +   P+ P   SP      N I      NS N T   N 
Sbjct: 52  SPNSTNSPNSPNSPNSPNSPNSPNSPNSPN--SPNSPNSPNSINSPNSPNSPNSTNSPNS 109

Query: 81  PLSP-SRSDFNYQSTPTSQNEGPRP 10
           P SP S +  N  ++P S N    P
Sbjct: 110 PNSPNSPNSPNSPNSPNSPNSPNSP 134


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = -3

Query: 261  VSQTNVKKPYNYSAPTSPMPVTHKIPSMPKTVSPYGHLRRN--MIEIEEKRNSLNKTGQR 88
            VSQ     P N  A    +PV+  I +  ++ S   H +    + +IEE    +  T   
Sbjct: 2569 VSQLEQGNPLNAHASLRAIPVSKDIVTSKQSSSQVVHAKETGPLPDIEEALEMMGDTDLT 2628

Query: 87   NRPLSPSRSDFNYQSTPTSQNEGPRPE 7
            + P   S+S F  QST     E  + +
Sbjct: 2629 DLPTDTSKSRFTPQSTMLEPTEAKQTQ 2655


>SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1407

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 27/124 (21%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
 Frame = -3

Query: 450 EIEIYKASQAQVNPASVGAEIKRVSTKF-LISPKKEAEVRTIQPTRARSLSLEKEGNCHE 274
           E++++K    + + + + +E+K  S +   +  KK+A  + ++  +  +  L +E    E
Sbjct: 455 ELQLFKLYHNEQDISHMTSEMKTKSRETEKLDSKKQAVEKQLKGKKQENAKLTREMGIIE 514

Query: 273 --VKKEVSQTNVKKPYNYSAPTSPMPVTHKIPSMPKTVSPYGHLR-RNMIEIEEKRNSLN 103
             ++++  + N K+P    A      V  +  +  K +      R R+  EIEE +NSL 
Sbjct: 515 KTIREKEDELNKKRPAFIKAKEKTSHVMKRHETSKKALEKAKAARKRHQAEIEELKNSLE 574

Query: 102 KTGQ 91
           +  Q
Sbjct: 575 EVKQ 578


>SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2)
          Length = 334

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -3

Query: 207 MPVTHKIPSMPKTVSPYGHLRRNMIEIEEKRNSLNKTGQRNRPLSPSRSDFNYQSTPTSQ 28
           +P+T   PS P T SP     R   +  ++ +S N   +RNRP    R D +  S+  S 
Sbjct: 186 IPLTPATPSTPSTPSPTSETPRPRPQPPKRSDSFNI--KRNRPFIIPRGDNSRASSYNSD 243

Query: 27  N 25
           +
Sbjct: 244 S 244


>SB_19921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -3

Query: 339 VRTIQPTRARSLSLEKEGNCHEVKKEVSQTNVKKPYNYSAPTSPMPVTHKIPSMPKTVSP 160
           V T+Q T  RS  L++E    ++K E++  N  K  + +A       TH+     K    
Sbjct: 59  VTTVQ-TETRSQKLKREREYRKLKTEIASQNASKIASQNASKIASQRTHRKTPREKLCYA 117

Query: 159 YGH 151
            GH
Sbjct: 118 IGH 120


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 261 VSQTNVKKPYNYSAPTSPMPVTHKIPSMPKTVSP 160
           VS +N + P  +S PT+P P++   PS     +P
Sbjct: 230 VSLSNSRNPTPFSNPTTPRPISPSSPSFSFNSNP 263


>SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -3

Query: 360 SPKKEAEVRTIQPTRARSLSLEKEGNCHEVKKEVSQTNVKKPYNYSAPTSPMPVTHKIPS 181
           SP++   +R ++  R     LE+ G   + + EV   +   P     PT+P  V +  PS
Sbjct: 279 SPQRLQRIRELERARDAE-ELERAGGTRDEEMEVVDRDAATP----PPTNPQLVVNDQPS 333

Query: 180 MPKT 169
            P+T
Sbjct: 334 SPQT 337


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 264  EVSQTNVKKPYNYSAPTSPMPVTHKIPSMPKTVSPYGHLR 145
            +VS T   +PY    PT P P   + P++P    P+G  R
Sbjct: 2215 DVSLTPFCRPYTGPKPTGPTPTPSRPPTLPP--CPFGLFR 2252


>SB_31642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -3

Query: 192 KIPSMPKTVSPYGHLRRNMIEIEEKRNS 109
           KIP+    +S YGH++  +++++E+  S
Sbjct: 73  KIPNDKLIISEYGHMKNELLKLQEEYES 100


>SB_35489| Best HMM Match : Sec23_BS (HMM E-Value=9.3)
          Length = 177

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 20/49 (40%), Positives = 28/49 (57%)
 Frame = -3

Query: 396 AEIKRVSTKFLISPKKEAEVRTIQPTRARSLSLEKEGNCHEVKKEVSQT 250
           + IKR   +F  SP+    +R  +  R+RSLS E     HEVKK VS++
Sbjct: 93  SSIKR--QRFRRSPQS---MREKKEGRSRSLSFESRTMPHEVKKPVSRS 136


>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2119

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = -3

Query: 249  NVKKPYNYSAPTSPMPVTHKIPSMPKTVSPYGH-LRR--NMIEIEEKRNSLNKTGQRNRP 79
            N KKP N     + + V  +  +  KT   Y + LR+  N + I  KR+SL    QR R 
Sbjct: 1595 NFKKPCN----NNEVCVGDEATAESKTTGMYVYRLRKEANGMGIYRKRSSL--AYQRYRL 1648

Query: 78   LSPSRSDFNYQSTPTSQNE 22
              PS+    Y+S P+ +NE
Sbjct: 1649 HGPSKYWVEYESLPSRKNE 1667


>SB_30177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 643

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 207 MPVTHKIPSMPKTVSPYGHLRRNMIEIEEKRNSLNKTGQR 88
           +P T+++   P T   +G+ R+  IE   +RN L K G R
Sbjct: 571 LPHTNELGYTPSTTDHHGNRRQPAIEDIIRRNELLKEGLR 610


>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = -3

Query: 267 KEVSQTNVKK--PYNYSAPT-SPMPVTHKIPSMPKTVSPYGHLRRNMIE--IEEK 118
           K  S  N K+  P   S+PT S  P   KIPS  KT+SP      N  E  +E+K
Sbjct: 269 KHESAHNCKRASPSARSSPTPSESPSLSKIPSSSKTLSPSKIFEHNETEPTVEKK 323


>SB_12499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 470

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 471 IKYRLWDEIEIYKASQAQVNPASV---GAEIKRVSTKFLIS 358
           +KY  W   +IYK   A  NP +V   G+ +  V++  L+S
Sbjct: 417 VKYSQWAYDQIYKNKVALENPCAVTRGGSRVAHVNSGILVS 457


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,360,218
Number of Sequences: 59808
Number of extensions: 265171
Number of successful extensions: 972
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)