Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    29   0.029
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   4.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   7.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 29.1 bits (62), Expect = 0.029
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 5/140 (3%)
 Frame = -3

Query: 435  KASQAQVNPASVGAEIKRVSTKFLISPKKEAEVRT-----IQPTRARSLSLEKEGNCHEV 271
            KA    + PA+V  E    STK   +PKKE +  T     I   + +  S EK  N H V
Sbjct: 766  KALLPVIKPANVNKEQSPNSTK-ETTPKKERKTATTTQPVISSRKEQKKSEEKNINDHCV 824

Query: 270  KKEVSQTNVKKPYNYSAPTSPMPVTHKIPSMPKTVSPYGHLRRNMIEIEEKRNSLNKTGQ 91
              E S          + PT+ + ++    ++P T  P      N I +E  ++ +N    
Sbjct: 825  TTEQSVVVTNVTTTINTPTTSV-ISMSGTTVPITSLPASSTSINSITVE--KDVINDVKT 881

Query: 90   RNRPLSPSRSDFNYQSTPTS 31
            +    +P++   N    P +
Sbjct: 882  QITTNTPAKKATNIGGKPVA 901


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -3

Query: 186 PSMPKTVSPYGHLRRNMIEIEEKRNSLNKTGQRNRPLSPSRS 61
           PS      P+    +  I  E  + ++NK   R RP S + S
Sbjct: 852 PSTGMMYKPFLIPEQTSISHENNQPTMNKCSDRKRPASQATS 893


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
          protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 69 SRSDFNYQSTPTSQNEGPRPE 7
          + S+F   S+P  +N+ P+P+
Sbjct: 15 AESEFEGASSPKKRNKNPQPK 35


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 226 VIIWFLHICLA 258
           ++IW L +CLA
Sbjct: 176 IVIWLLALCLA 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,944
Number of Sequences: 438
Number of extensions: 2566
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)