Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36120.1 68417.m05141 expressed protein                             33   0.15 
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    30   1.1  
At2g20520.1 68415.m02397 fasciclin-like arabinogalactan-protein ...    29   1.9  
At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138...    28   4.4  
At2g47500.1 68415.m05929 kinesin motor protein-related                 28   4.4  
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea...    28   4.4  
At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu...    27   5.8  
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu...    27   5.8  
At5g07980.1 68418.m00928 dentin sialophosphoprotein-related cont...    27   7.7  
At4g24150.1 68417.m03465 expressed protein ; expression supporte...    27   7.7  
At2g25480.1 68415.m03051 expressed protein                             27   7.7  
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    27   7.7  
At1g18370.1 68414.m02295 kinesin motor family protein (NACK1) si...    27   7.7  
At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein s...    27   7.7  

>At4g36120.1 68417.m05141 expressed protein
          Length = 981

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = -3

Query: 324 PTRARSLSLEKEGNCHEVKKEVSQTNVKKPYNYSAPTSPMPVTHKIPSMPKTVSPYGHLR 145
           P     + LE EG  HE     +Q N+ + +N     + +   HK+    K  + Y  L 
Sbjct: 304 PAAMAQMKLEVEGLGHEFTDPRAQRNMSQNHNAHIAKAEISTDHKLEEC-KRENVY--LT 360

Query: 144 RNMIEIEEKRNSLNK-TGQRNRPLSPSRS 61
           R  +E+EE+  +L +    RN  L  SR+
Sbjct: 361 RRTLEMEEEIQTLKEHLSARNNELQVSRN 389


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
 Frame = -3

Query: 276 EVKKEVSQTNVKKPYNYSAPTSPMPVTHKIPSMPKTVSPYGHLRRNMIE--IEEKRNSLN 103
           E KKE++  N+++P       SP P   + PS PK  +P  H   N  E   E  +    
Sbjct: 419 EPKKEINPPNLEEPSKPKPEESPKP---QQPS-PKPETP-SHEPSNPKEPKPESPKQESP 473

Query: 102 KTGQ-RNRPLSPSRSDFNYQSTPTSQNEGPRPE 7
           KT Q + +P SP + +   Q  P  +   P+PE
Sbjct: 474 KTEQPKPKPESP-KQESPKQEAPKPEQPKPKPE 505


>At2g20520.1 68415.m02397 fasciclin-like arabinogalactan-protein
           (FLA6) identical to gi|13377780_gb_AAK20859
          Length = 247

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 237 PYNYSAPTSPMPVTHKIPSMPKTVSPYGHLRRNMIEI 127
           PY  S PT+P P T K P     +   GH    +I++
Sbjct: 19  PYIQSQPTAPAPTTEKSPINLTAILEAGHQFTTLIQL 55


>At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'auxin-independent growth promoter -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 677

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 135 IEIEEKRNSLNKTGQRNRPLSP 70
           IE+E K +SL  T QR +PL P
Sbjct: 413 IEVETKHDSLKSTRQRPQPLPP 434


>At2g47500.1 68415.m05929 kinesin motor protein-related 
          Length = 974

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 177 PKTVSPYGHLRRNMIEIEEKRNSLNKTGQRNRPLSPSRSDFNYQSTPTS 31
           P  +     +R+N    E   NSL++T   N   +PS +D N  S+P+S
Sbjct: 184 PPALGKSSFVRKNS---EPFMNSLSRTSSINNEKAPSENDSNKLSSPSS 229


>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
           family protein similar to Sec31p (GI:13928450)  {Oryza
           sativa}
          Length = 969

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 249 NVKKPYNYSAPTSPMPVTHKIPSMPKTVSP 160
           N K P   + P  PM  TH++   P+ V+P
Sbjct: 815 NSKIPQTVAPPVRPMTPTHQVAVQPEPVAP 844


>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -3

Query: 213 SPMPVTHKIPSMPKTVSPYG-HLRRNMIEIEEKRNSLNKTGQRNRPLS-PSRSD 58
           SP+P+ ++ PS+P TVS    HL    + +E +  +  K G+  R  S  +RSD
Sbjct: 119 SPLPLVYRSPSLPTTVSSSDPHLTHAPVPMEPRDGA--KDGREIRVESRENRSD 170


>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -3

Query: 213 SPMPVTHKIPSMPKTVSPYG-HLRRNMIEIEEKRNSLNKTGQRNRPLS-PSRSD 58
           SP+P+ ++ PS+P TVS    HL    + +E +  +  K G+  R  S  +RSD
Sbjct: 119 SPLPLVYRSPSLPTTVSSSDPHLTHAPVPMEPRDGA--KDGREIRVESRENRSD 170


>At5g07980.1 68418.m00928 dentin sialophosphoprotein-related
           contains weak similarity to Swiss-Prot:Q9NZW4 dentin
           sialophosphoprotein precursor [Homo sapiens]
          Length = 1501

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 417 LEPATPYKFQFHPKGDI 467
           + P+ P KFQ+HP G+I
Sbjct: 692 VRPSIPRKFQYHPMGNI 708


>At4g24150.1 68417.m03465 expressed protein ; expression supported
           by MPSS
          Length = 493

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 270 KKEVSQTNVKKPYNYSAPTSPMPVTHKIPSMPKTVSPYGHLR 145
           K + SQ     P  Y  P S +PV   + ++P   SPY H R
Sbjct: 301 KNDTSQLVRTYPQFYGQPISQIPV---LSTLPSASSPYDHHR 339


>At2g25480.1 68415.m03051 expressed protein 
          Length = 404

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -3

Query: 297 EKEGNCHEVK-KEVSQTNVK---KPYNYSAPTSPMPVTHKIPSMPKT 169
           E+E N  + K KE  +  +K   K  N+ A  +PMP  ++ P +PKT
Sbjct: 209 EEEKNTVQAKSKETQEAELKMLRKSLNFKA--TPMPTFYQEPQLPKT 253


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -3

Query: 357 PKKEAEVRTIQPTRARSLSLEKEGNCHEVKKEVSQTNVKKPYNYSAPTSP--MPVTHKIP 184
           P+  A++R    T+  +  LEK    H    E  +     P+N+ +P  P  +P  HK+ 
Sbjct: 329 PQVMAKLRHEINTKFDNEDLEKLVYLHAALSESMRLYPPLPFNHKSPAKPDVLPSGHKVD 388

Query: 183 SMPKTV 166
           +  K V
Sbjct: 389 ANSKIV 394


>At1g18370.1 68414.m02295 kinesin motor family protein (NACK1)
           similar to kinesin heavy chain isolog GB:AAB63609
           GI:2262101 from [Arabidopsis thaliana]
          Length = 974

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -3

Query: 213 SPMPVTHKIPSMPKTVSPYGHLRRN----MIEIEEKRNSLNKTGQRNRPLSPSRS 61
           +P P T K   + +     G LRR      I++EE R  L    Q+N+ L+P  S
Sbjct: 385 TPGPSTEKDFKIQQMEMEIGELRRQRDDAQIQLEELRQKLQGDQQQNKGLNPFES 439


>At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein
           similar to putative variable cytadhesin protein
           (GI:7677312) {Mycoplasma gallisepticum}; contains Pfam
           PF02891: MIZ zinc finger domain
          Length = 842

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
 Frame = -3

Query: 312 RSLSLEKEGNCHEVKKEVSQTNVKKPYNY--SAPTSPMPVT-HKIPSMPKTVSPYGHLRR 142
           ++L +   GN        S T+++   NY  +A   PMP +   + ++P T   Y H R 
Sbjct: 621 QTLPVNYRGNTDHRSTPYSITHLQTLLNYGGNADQRPMPSSITNLQTLPATYGGYAHQRP 680

Query: 141 NMIEIEEKRNS-LNKTGQRNRPLSPSRSDFNYQSTPTS 31
               I   R S +N  G  ++   PS S  + Q+ P S
Sbjct: 681 MSSSITHPRTSPVNYGGTPDQRPMPS-SITHPQTLPVS 717


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,230,338
Number of Sequences: 28952
Number of extensions: 193805
Number of successful extensions: 750
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)