Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   2.2  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   5.2  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   5.2  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   6.8  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   9.0  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   9.0  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 317 NPVLSHG-GLLLDRYGEPPRLREAILRC 397
           +P L +G G+L DRYG      EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 203 GRS*GSNESEDSKENSPHLNFSYNHRFFDD--IQKNMC 96
           G S   N S+ + +N PHL+    ++ F+D  I K++C
Sbjct: 363 GESKLPNTSKQASQNLPHLDDELAYQRFEDQVIDKSVC 400


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
 Frame = +3

Query: 240 RDEWLTMEQTCY--NMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEER 413
           +D+W +     Y   ++ +++  ++++ I       Y S+++V+  G + L     T E 
Sbjct: 390 KDKWTSQLGVLYLSPLVGEELASQISSKIYDDLHAFYKSLNSVD--GISNL-----TIEE 442

Query: 414 EHATKLIDYLLMRGKLTGSVTDLITYRGPRQHVVG 518
           E        L   G+L  S T+L  YRG R  VVG
Sbjct: 443 EELVNTDFSLAYGGRLLLSHTNLHLYRGHRYGVVG 477


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 222 VSPVTIRDEWLTMEQTCYNMMRKQIQEEV 308
           +S  +++  ++  EQ  Y   +KQ QEE+
Sbjct: 39  LSDASVKSSYVDQEQQAYENWKKQEQEEI 67


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 237 IRDEW---LTMEQTCYNMMRKQIQEEVAASIQYLAMGA 341
           +RD++   LTM Q C N+  KQ    + A  Q L+ G+
Sbjct: 341 LRDQYSLHLTMAQECMNIFEKQQLNLIGAIEQDLSTGS 378


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 16  LNFLRIISRLLRQCV*RLDLYN 81
           LN+L I +++LR C   +D+YN
Sbjct: 469 LNYLYIRAQILRDCDIIIDIYN 490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,986
Number of Sequences: 5004
Number of extensions: 32810
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)