Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304G04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 56 1e-08
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 53 2e-07
04_04_0701 + 27373057-27374013 31 0.74
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 2.3
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011... 29 3.0
05_05_0221 - 23385626-23386702 28 4.0
01_06_1124 - 34679205-34680926,34681438-34682811 27 6.9
11_01_0752 - 6327269-6327764,6328571-6328839 27 9.1
06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720... 27 9.1
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 56.4 bits (130), Expect = 1e-08
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = +3
Query: 270 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 449
C + +QI E AS Y ++ AYF D V GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 450 RG---KLTGSVTDLITYRGPRQ 506
RG +L VT L + P +
Sbjct: 151 RGGRVRLQSIVTPLTEFDHPEK 172
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 52.8 bits (121), Expect = 2e-07
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +3
Query: 303 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 473
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 474 TDLITYRGPRQ 506
T L + P +
Sbjct: 194 TPLTEFDHPEK 204
>04_04_0701 + 27373057-27374013
Length = 318
Score = 30.7 bits (66), Expect = 0.74
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +1
Query: 337 GLTSRSIR*TAPASRSYSSMLRLKNASTRPSSLTTCS*GAS*QAP*PTSSRTGAPANTSW 516
G+ +++++ AP S SS L ++ +R ++ TT S G S + PTS P++ SW
Sbjct: 235 GVANKAVKTEAPTSAYSSSSL---SSMSRDTTATTSSAGTSTGSSEPTSFPVVTPSSWSW 291
Query: 517 E 519
+
Sbjct: 292 D 292
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 330 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 446
A+ YF + TV P A FF + +RE T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151
>02_05_0448 -
29100674-29100716,29100821-29100902,29101010-29101130,
29101481-29101546,29101628-29101735,29102083-29102148,
29102605-29102633,29102773-29102902
Length = 214
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 251 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDIQKN 102
P+I G+ D + C D KE PH RFF+D +KN
Sbjct: 129 PMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPH-RLQEIRRFFEDYKKN 177
>05_05_0221 - 23385626-23386702
Length = 358
Score = 28.3 bits (60), Expect = 4.0
Identities = 28/72 (38%), Positives = 31/72 (43%)
Frame = +2
Query: 305 SGRVNPVLSHGGLLLDRYGEPPRLREAILRCCD*RTRARDQAH*LPAHEGQADRLRNRPH 484
S V L HG L +G L ILRCCD R A +A A AD R +P
Sbjct: 36 SAAVLEALLHGASLPPAHGGAHALAAEILRCCD-RALAALRAG-GDAESSSADTKR-KPA 92
Query: 485 HVQGPPPTRRGR 520
Q P TRR R
Sbjct: 93 TAQ--PSTRRRR 102
>01_06_1124 - 34679205-34680926,34681438-34682811
Length = 1031
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 314 VNPVLSHGGLLLDRYGEPPRLREA 385
+NP + H G ++D G RLREA
Sbjct: 355 INPDVKHFGCIIDMLGRAGRLREA 378
>11_01_0752 - 6327269-6327764,6328571-6328839
Length = 254
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 419 RDQAH*LPAHEGQADRLRNRPHHVQGPPPTRRGR 520
R A LP+ G +R R RP + P RRGR
Sbjct: 133 RGAARLLPSTRGDRERCRVRPRRPRLPGARRRGR 166
>06_03_0526 +
21771519-21771607,21771685-21771810,21771890-21772010,
21772123-21772851,21772954-21773349,21774594-21774665,
21774741-21774803,21775236-21775337
Length = 565
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 290 TDPGGSGRVNPVLSHGGLLLDRYGEPP 370
T G S +P HGGLL YGE P
Sbjct: 185 TSVGASAAADPSPVHGGLLAPVYGEFP 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,205,844
Number of Sequences: 37544
Number of extensions: 263249
Number of successful extensions: 672
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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