Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   1e-08
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   3e-08
SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.)               55   3e-08
SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   4e-08
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)               46   1e-05
SB_44028| Best HMM Match : RVT_1 (HMM E-Value=1.3)                     35   0.047
SB_7503| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.33 
SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.58 
SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40)         31   0.58 
SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)         31   0.58 
SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)                31   0.58 
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.58 
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 30   1.0  
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)                      29   3.1  
SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_57416| Best HMM Match : rve (HMM E-Value=0.0011)                    28   5.4  
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)                 27   7.1  
SB_46811| Best HMM Match : Ferritin (HMM E-Value=0.0021)               27   9.4  
SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40)                    27   9.4  

>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 28/58 (48%), Positives = 36/58 (62%)
 Frame = +3

Query: 282 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG 455
           + KQI  E+ AS  Y++M  +F  D V  PGF K F +A+ EEREHA KL  + L RG
Sbjct: 150 VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKYFMEASHEEREHAEKLAKFQLQRG 207


>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 28/58 (48%), Positives = 35/58 (60%)
 Frame = +3

Query: 282 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG 455
           + KQI  E+ AS  Y++M  +F  D V  PGF K F  A+ EEREHA KL  + L RG
Sbjct: 135 VNKQINLELYASYVYMSMAYHFDRDDVALPGFHKYFMKASHEEREHAEKLAKFQLQRG 192


>SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 28/58 (48%), Positives = 35/58 (60%)
 Frame = +3

Query: 282 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG 455
           + KQI  E+ AS  Y++M  +F  D V  PGF K F  A+ EEREHA KL  + L RG
Sbjct: 18  VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKYFIKASHEEREHAEKLAKFQLQRG 75


>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 29/64 (45%), Positives = 37/64 (57%)
 Frame = +3

Query: 264 QTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYL 443
           + C   + KQI  E+ AS  YL+M  +F  D V  PGF K F  A+ EEREHA KL+ + 
Sbjct: 197 EECEAGINKQINLELYASYAYLSMAFHFDRDDVALPGFHKYFLKASHEEREHAEKLMKFQ 256

Query: 444 LMRG 455
             RG
Sbjct: 257 NERG 260



 Score = 36.3 bits (80), Expect = 0.015
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +3

Query: 339 AYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG 455
           A+F  D ++ PGFA  F  AA EE  HA   +++L  RG
Sbjct: 2   AHFGRDDIHLPGFAAFFKKAAEEEYTHAHMFMEFLNKRG 40


>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 25/55 (45%), Positives = 31/55 (56%)
 Frame = +3

Query: 264 QTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATK 428
           + C   + KQI  E+ AS  Y +M  YF  + V+ PGF K F   A EEREHA K
Sbjct: 10  EECEAGINKQINLELYASYVYTSMACYFDREDVHLPGFHKFFKKQAHEEREHAEK 64


>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
          Length = 126

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 22/47 (46%), Positives = 29/47 (61%)
 Frame = +3

Query: 282 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHA 422
           + KQI +E+ A   YL+M  +F  D +N PGF K F  A+ EE EHA
Sbjct: 38  INKQINKELYAHYTYLSMAFHFDRDDINLPGFNKFFKKASKEEWEHA 84


>SB_44028| Best HMM Match : RVT_1 (HMM E-Value=1.3)
          Length = 249

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = +3

Query: 342 YFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 485
           +F++  +N+PG  ++ FDAA+E +   T L  YLL     T S+T ++
Sbjct: 30  HFAVTNINKPGKLRIIFDAASEYQ--GTSLNKYLLHGPDCTNSLTGVL 75


>SB_7503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 342 YFSIDTVNRPGFAKLFFDAATEEREHA 422
           +F  D +N PGF K F  A+ EE EHA
Sbjct: 32  HFDRDDINLPGFNKFFKKASKEEWEHA 58


>SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1379

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 342 YFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 485
           +F++  +N+PG  ++ FDAA+E +   T L   LL     T S+T ++
Sbjct: 350 HFAVTNINKPGKLRIIFDAASEYQ--GTSLNKNLLHGPDCTNSLTGVL 395


>SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40)
          Length = 1740

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 342  YFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 485
            +F++  +N+PG  ++ FDAA+E +   T L   LL     T S+T ++
Sbjct: 868  HFAVTNINKPGKLRIIFDAASEYQ--GTSLNKNLLHGPDCTNSLTGVL 913


>SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)
          Length = 475

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 342 YFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 485
           +F++  +N+PG  ++ FDAA+E +   T L   LL     T S+T ++
Sbjct: 151 HFAVTNINKPGKLRIIFDAASEYQ--GTSLNKNLLHGPDCTNSLTGVL 196


>SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1244

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 342 YFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 485
           +F++  +N+PG  ++ FDAA+E +   T L   LL     T S+T ++
Sbjct: 667 HFAVTNINKPGKLRIIFDAASEYQ--GTSLNKNLLHGPDCTNSLTGVL 712


>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1515

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 342  YFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 485
            +F++  +N+PG  ++ FDAA+E +   T L   LL     T S+T ++
Sbjct: 945  HFAVTNINKPGKLRIIFDAASEYQ--GTSLNKNLLHGPDCTNSLTGVL 990


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +2

Query: 230 RHHQG*VAHHGADLLQHDEETDPGGSG 310
           RHHQ   AHHG   L+HD E D  GSG
Sbjct: 811 RHHQH-GAHHG---LKHDTENDASGSG 833


>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
          Length = 2352

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 402  TEEREHATKLIDYLLMRGKLTGSVTDLITYRGP 500
            ++ RE A + I   L+   LTGS T++I  RGP
Sbjct: 1841 SDHREQAAQEIQAFLLDMILTGSKTEIIELRGP 1873


>SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 278 VVASLLHGEPLIPDGDGADVTLCSCGRS*GSNESEDSKENSPH 150
           V+A LL G+P+ P   G D  L    +  G+   E  KE +PH
Sbjct: 252 VLAELLLGQPIFPGDSGVD-QLVEIIKVLGTPTREQIKEMNPH 293


>SB_57416| Best HMM Match : rve (HMM E-Value=0.0011)
          Length = 807

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 342 YFSIDTVNRPGFAKLFFDAATEEREHA 422
           +F + + N+PG  ++ FDAA + R ++
Sbjct: 138 HFGVTSANKPGCVRIVFDAAAKTRTNS 164


>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
          Length = 792

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 281 DEETDPGGSGRVNPVLSHGGLLLDRYGEP 367
           D   DPGG  R++  + HGG  +DR G P
Sbjct: 226 DRPMDPGGP-RMDHPMGHGGPPMDRGGPP 253


>SB_46811| Best HMM Match : Ferritin (HMM E-Value=0.0021)
          Length = 73

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 396 AATEEREHATKLIDYLLMRG 455
           A+ EEREHA KL  + L RG
Sbjct: 3   ASHEEREHAEKLAKFQLQRG 22


>SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40)
          Length = 434

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 191 GSNESEDSKENSPHLNF 141
           GSNES+   +NS HLN+
Sbjct: 239 GSNESQQELQNSSHLNY 255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,544,150
Number of Sequences: 59808
Number of extensions: 267922
Number of successful extensions: 640
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)