Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ...    52   2e-07
At3g56090.1 68416.m06234 ferritin, putative similar to ferritin ...    49   2e-06
At3g11050.1 68416.m01333 ferritin, putative similar to ferritin ...    47   7e-06
At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin...    47   9e-06
At3g61010.1 68416.m06826 glycosyl hydrolase family protein 85 hy...    40   0.001
At4g25520.1 68417.m03680 transcriptional co-regulator family pro...    29   1.9  
At2g32240.1 68415.m03940 expressed protein contains Pfam profile...    29   1.9  
At2g18230.1 68415.m02124 inorganic pyrophosphatase [soluble] (PP...    29   1.9  
At3g12260.1 68416.m01531 complex 1 family protein / LVR family p...    29   2.5  
At1g79060.1 68414.m09218 expressed protein                             29   2.5  

>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 27/62 (43%), Positives = 35/62 (56%)
 Frame = +3

Query: 270 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 449
           C   + +QI  E   S  Y AM AYF  D +   G AK F +++ EEREHA KL++Y   
Sbjct: 97  CEAAINEQINVEYNVSYVYHAMYAYFDRDNIALKGLAKFFKESSLEEREHAEKLMEYQNK 156

Query: 450 RG 455
           RG
Sbjct: 157 RG 158


>At3g56090.1 68416.m06234 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 26/62 (41%), Positives = 34/62 (54%)
 Frame = +3

Query: 270 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 449
           C   + +QI  E   S  Y A+ AYF  D V   G AK F +++ EEREHA  L++Y   
Sbjct: 95  CEAAVNEQINVEYNVSYVYHALYAYFDRDNVALKGLAKFFKESSVEEREHAELLMEYQNK 154

Query: 450 RG 455
           RG
Sbjct: 155 RG 156


>At3g11050.1 68416.m01333 ferritin, putative similar to ferritin
           subunit cowpea2 precursor GI:2970654 (Vigna
           unguiculata); contains Pfam profile PF00210:
           Ferritin-like domain
          Length = 253

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 25/55 (45%), Positives = 30/55 (54%)
 Frame = +3

Query: 291 QIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG 455
           QI  E   S  Y A+ AYF  D V   GFAK F D++ EER HA   ++Y   RG
Sbjct: 96  QINVEYNVSYVYHALYAYFDRDNVGLKGFAKFFNDSSLEERGHAEMFMEYQNKRG 150


>At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin
           [Arabidopsis thaliana] GI:1246401, GI:8163920
          Length = 255

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 24/59 (40%), Positives = 33/59 (55%)
 Frame = +3

Query: 279 MMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG 455
           ++ +QI  E   S  Y +M AYF  D V   G AK F +++ EER HA K ++Y   RG
Sbjct: 97  VINEQINVEYNVSYVYHSMYAYFDRDNVAMKGLAKFFKESSEEERGHAEKFMEYQNQRG 155


>At3g61010.1 68416.m06826 glycosyl hydrolase family protein 85
           hypothetical protein F9F8.14 - Arabidopsis thaliana,
           EMBL:AC009991
          Length = 355

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = +3

Query: 294 IQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDY 440
           I  E   S  Y A+ AY   D V   GF K F D++ EER +A K ++Y
Sbjct: 297 IDVEYNVSYVYHALDAYIERDNVGLKGFTKFFNDSSLEERGYAEKFMEY 345


>At4g25520.1 68417.m03680 transcriptional co-regulator family
           protein contains similarity to GP|18033922|gb|AAL57277
           SEUSS transcriptional co-regulator [Arabidopsis
           thaliana]
          Length = 748

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = +1

Query: 367 APASRSYSSMLRLKNASTRPSSLTTCS*GAS*QAP*PTSSRTGAPANTS 513
           A A  +Y SML  +NA   P+S T    G S Q P P S++  +P+++S
Sbjct: 558 AAALTNYQSMLMRQNAMNNPNSNTGKQEGFSSQNPTPNSNQ--SPSSSS 604


>At2g32240.1 68415.m03940 expressed protein contains Pfam profile:
           PF04508 viral A-type inclusion protein repeat
          Length = 775

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +2

Query: 371 RLREAILRCCD*RTRARDQAH*LPAHEGQADRLRNRPHHVQGPPPTRR 514
           RL EAI R     T + D    L  HE Q +  +   H   G   TR+
Sbjct: 368 RLEEAIERFNQKETESSDLVEKLKTHENQIEEYKKLAHEASGVADTRK 415


>At2g18230.1 68415.m02124 inorganic pyrophosphatase [soluble] (PPA)
           / pyrophosphate phospho-hydrolase / PPase nearly
           identical to SP|P21216 Soluble inorganic pyrophosphatase
           (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase)
           {Arabidopsis thaliana}
          Length = 218

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -1

Query: 251 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDIQKN 102
           P+I  G+  D  +  C          D KE  PH   +   RFF+D +KN
Sbjct: 133 PMIDQGEKDDKIIAVCADDPEFRHYRDIKELPPH-RLAEIRRFFEDYKKN 181


>At3g12260.1 68416.m01531 complex 1 family protein / LVR family
           protein contains Pfam PF05347: Complex 1 protein (LYR
           family)
          Length = 133

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 345 FSIDTVNRPGFAKLFFDAATEEREHAT--KLIDYLLMRGKLTGSVTDLITYRGPRQHVVG 518
           +++  V  P   +    A      H T  K+ID L+ +G     +TD++ +   R H++G
Sbjct: 44  YNLQDVVAPSQLRYAISAQIRNNAHITDPKVIDLLIFKGM--EELTDIVDHAKQRHHIIG 101

Query: 519 E 521
           +
Sbjct: 102 Q 102


>At1g79060.1 68414.m09218 expressed protein
          Length = 396

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 272 ASLLHGEPLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLN 144
           ASLL   PL+ D D   V++ S   S  S+ S    E+ P L+
Sbjct: 175 ASLLMSLPLLKDSDSESVSISSSRMSLSSSSSGHDHEDLPRLS 217


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,043,191
Number of Sequences: 28952
Number of extensions: 186709
Number of successful extensions: 466
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)