Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    27   1.3  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    27   1.3  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.2  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   3.0  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    26   3.9  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   6.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.0  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   9.0  

>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 38  IVTLEALRPFIVDNFPQNPTPFPYLRH 118
           I+ +E    F  DN P+NP P  Y  H
Sbjct: 334 IIPVETALGFFTDNTPENPLPTSYQVH 360


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 416 CLRLV*ISSPHQSKGERAWCPSRTVPTC-SQTSLPP 312
           CL  + +S+   +K ++ W  SR +P C +Q  L P
Sbjct: 278 CLERMKVSTRQYAKSQKKWIQSRFLPMCLAQQDLSP 313


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 231  NSSWRSKL*RAATSDRETCSARAPSAGRRQTR 326
            NS++   L R  T+D+E  +   PS+ RR +R
Sbjct: 2401 NSNYSGSLMRRRTNDQEEDALATPSSSRRDSR 2432


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 471 PNPILSPVALRQWPRRVTVSPSCMNFLSSPV 379
           PN IL+    R +  R   +PS MNFL+SPV
Sbjct: 469 PNAILTSFN-RNFRSRNDGNPSTMNFLTSPV 498


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 409 RRHGHSTRPLPQRDRTQNR 465
           RR  +S  P P+RDR +NR
Sbjct: 289 RRDAYSRSPSPRRDREENR 307


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 382 W*GEEIHTRRRHGHSTRPLPQRDRTQNRVREMRGETVTGH 501
           W     H+R R   S +PLP +D      R++ G  +  H
Sbjct: 16  WPNVNGHSRTRSVPSLKPLPHQDSKNLLYRQICGRLLAQH 55


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
 Frame = -3

Query: 432 PRRVTVSPSCMNFLSSPVERRTGLVPFQD--SSNMLPNESAASPLMV--PEPSKSPGLRL 265
           P+R  + P    F    V +RTG+ P        M+P  +   P M    +P       +
Sbjct: 460 PQRTGLQPQMTGFQQPMVPQRTGMQPQMTGFQQPMMPQRTGLQPQMTGFQQPMVPQRTGM 519

Query: 264 QPVI 253
           QP++
Sbjct: 520 QPMM 523


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 181 GDHCLPFKLSVHVLDGETAAGAANYN 258
           GD  + F+ S+H++DG   A   NY+
Sbjct: 721 GDDNVHFQHSMHLMDGLNLANCYNYD 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,908
Number of Sequences: 5004
Number of extensions: 50568
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)