Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304G03f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47413| Best HMM Match : No HMM Matches (HMM E-Value=.) 212 2e-55
SB_42906| Best HMM Match : FAA_hydrolase (HMM E-Value=8.8e-40) 199 1e-51
SB_33007| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05) 29 3.1
SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_3976| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2) 28 4.1
SB_54781| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_33716| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_13558| Best HMM Match : THAP (HMM E-Value=0.22) 28 5.4
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 27 7.1
SB_49639| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43) 27 7.1
SB_14567| Best HMM Match : MFS_1 (HMM E-Value=1.1) 27 7.1
SB_11629| Best HMM Match : AT_hook (HMM E-Value=0.78) 27 7.1
SB_52192| Best HMM Match : Fibrinogen_C (HMM E-Value=0.077) 27 9.4
SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_3802| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_36381| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_47413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 212 bits (517), Expect = 2e-55
Identities = 93/166 (56%), Positives = 117/166 (70%)
Frame = +2
Query: 5 AKNLGSTISPWIVTLEALRPFIVDNFPQNPTPFPYLRHDDKFNFDIKLEVDIQTEKSPVV 184
AKN ++ISPW+VT+EAL+PF+ N Q P P PYL+H D + FDIKL+V +
Sbjct: 75 AKNFATSISPWVVTMEALQPFVTANPVQIPEPLPYLQHSDPYTFDIKLQVALNCPGINNP 134
Query: 185 TTVCRSNYRYMYWTVKQQLAQQTITGCNLRPGDLLGSGTISGEAADSFGSMLELSWKGTK 364
+C +N++YMYWT KQQLA TITGCN+RPGDL+GSGTISGE DS+GS+LEL WKGTK
Sbjct: 135 AVICNTNFKYMYWTQKQQLAHHTITGCNVRPGDLMGSGTISGETPDSYGSLLELCWKGTK 194
Query: 365 PVRLSTGEERKFIQDGDTVTLRGHCLNATGLRIGFGRCEGKLLPAI 502
P+ L G RKF+QDGD V + G G R+GFG C +LPA+
Sbjct: 195 PLDLGNGVTRKFLQDGDEVVMTGFA-QGDGFRVGFGECRAAVLPAV 239
>SB_42906| Best HMM Match : FAA_hydrolase (HMM E-Value=8.8e-40)
Length = 223
Score = 199 bits (485), Expect = 1e-51
Identities = 92/166 (55%), Positives = 117/166 (70%)
Frame = +2
Query: 5 AKNLGSTISPWIVTLEALRPFIVDNFPQNPTPFPYLRHDDKFNFDIKLEVDIQTEKSPVV 184
+KN S+ISPWIVT++AL F V Q+PTP PYL+ FDI LEV I+ E+S
Sbjct: 57 SKNFASSISPWIVTMDALEAFRVKGPEQSPTPLPYLQQTGDHAFDINLEVSIKPEESDE- 115
Query: 185 TTVCRSNYRYMYWTVKQQLAQQTITGCNLRPGDLLGSGTISGEAADSFGSMLELSWKGTK 364
T V +SN++YMYW++ QQLA T+ GC + GD++GSGTISG DSFGSMLEL+W G
Sbjct: 116 TIVSKSNFKYMYWSMSQQLAHHTVNGCRVNSGDMMGSGTISGPTPDSFGSMLELTWGGKN 175
Query: 365 PVRLSTGEERKFIQDGDTVTLRGHCLNATGLRIGFGRCEGKLLPAI 502
P++L+ G ERKFI D DTV +RG+C N +RIGFG C KLLPA+
Sbjct: 176 PIKLNDGTERKFINDNDTVIIRGYCEN-EDMRIGFGECSSKLLPAV 220
>SB_33007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 31.5 bits (68), Expect = 0.44
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 398 ISSPHQSKGERAWCPSRTVPTCSQTSLP 315
++S Q+KG+R W P T CS+ LP
Sbjct: 46 VNSKRQAKGDRVWEPGTTASICSKHFLP 73
>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
Length = 639
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = -3
Query: 420 TVSPSCMNFLSSPVERRTG---LVPFQD--SSNMLPNESAASPLMVPEPSKSP 277
TV S M F+ P RR ++ F+D +S L + SP+ + EPS SP
Sbjct: 286 TVRRSAMFFVVGPSPRRAKSAKVIKFKDGSTSESLNSSRTESPVTIQEPSPSP 338
>SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +2
Query: 353 KGTKPVR--LSTGEERKFIQDGDTVTLRGHCLNATGLRIGFGRCEGKLLPAIP 505
KGTK + T E + QDG+ +TL N TG + K LP IP
Sbjct: 65 KGTKQRHGNVKTVEFKVVEQDGNVITLVNDAANGTGSGGNLPKIRRKKLPQIP 117
>SB_3976| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 465 PILSPVALRQWPRRVTVSPSCMNFLSS 385
P+L P + +W R V ++ CM F+S+
Sbjct: 460 PLLDPQSQSRWSRLVRITAYCMRFVSN 486
>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
Length = 466
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +2
Query: 353 KGTKPVR--LSTGEERKFIQDGDTVTLRGHCLNATGLRIGFGRCEGKLLPAIP 505
KGTK + T E + QDG+ +TL N TG + K LP IP
Sbjct: 179 KGTKQRHGNVKTVEFKVVEQDGNVITLVNDAANGTGSGGNLPKIRRKKLPQIP 231
>SB_54781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 321 SAASPLMVPEPSKSPGLRLQPVIVCCASCCFTVQ 220
SA +P + SKS +L+ +VCC C + VQ
Sbjct: 373 SAVNPYVYALQSKSFRKQLKRYLVCCCQCQYEVQ 406
>SB_33716| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 922
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -3
Query: 462 ILSPVALRQWPRRVT--VSPSCMNFLSSPVERRTGLVPFQDSSNML 331
I+ PV++ W +++T P C+ + PVERRT LV F +L
Sbjct: 6 IVFPVSM--WMKKLTWEEEPRCIAVME-PVERRTALVLFNSEGTIL 48
>SB_13558| Best HMM Match : THAP (HMM E-Value=0.22)
Length = 121
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 398 ISSPHQSKGERAWCPSRTVPTCSQTSLP 315
++S Q+K R W P T CS+ LP
Sbjct: 46 VNSKRQAKWNRVWKPGTTASICSKHFLP 73
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 333 LPNESAASPLMVPEPSKS-PGLRLQPVIVCCASCCFTVQYM 214
L + SA++ ++ P P P +R P + C + C TVQ M
Sbjct: 1626 LASASASANVITPRPDMVVPAVR-DPTVKSCLAACLTVQLM 1665
>SB_49639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 447
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 373 PFDW*GEEIHTRRRHGHSTRPLPQRDRTQNRVREMRGETVTG 498
P W +E R ++ + RP PQR++T NR R + G + G
Sbjct: 381 PKSWLMQE-DQRCKYPTNFRPFPQRNKTANRSRMLYGMSNKG 421
>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
Length = 1806
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 344 LSWKGTKPVRLSTGEERKFIQDGDTVTLR 430
+SWK K V LST + K + DT+TLR
Sbjct: 198 VSWK-EKSVNLSTKTQNKIQESDDTLTLR 225
>SB_14567| Best HMM Match : MFS_1 (HMM E-Value=1.1)
Length = 600
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = -3
Query: 435 WPRRVTVSPSCMNFLSSPVERRTGLVPFQDSSNMLPNESAASPLMVPEPSKSPGLRLQPV 256
+PRR SC+ F+S + ++PF +N LP E S V + +PV
Sbjct: 510 YPRRTRARKSCVKFVSFRRHHQL-ILPFSLQTNSLP-ERKVSAFFVSYVFLVVVMEEKPV 567
Query: 255 IVCCAS 238
V C S
Sbjct: 568 RVTCPS 573
>SB_11629| Best HMM Match : AT_hook (HMM E-Value=0.78)
Length = 147
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -3
Query: 393 LSSPVERR-TGLVPFQDSSNMLPNESAASPLMVPEPSKSPGLRLQPVI 253
L SPV+R+ T VPF+ +LP+ +A + S++P +R P++
Sbjct: 17 LPSPVQRKVTFPVPFRF---ILPSNTAGMAKLKASSSQTPAIRFTPIL 61
>SB_52192| Best HMM Match : Fibrinogen_C (HMM E-Value=0.077)
Length = 723
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -3
Query: 429 RRVTVSPSCMNFLSSPVERRTGLVPFQDS-SNMLPNESAASPLMVPEPSKSP 277
R+ T +P+ N L S E VP Q + +P E + VPEPS P
Sbjct: 430 RQRTSTPTVANDLQSSTE--LAQVPMQTTVPKQIPEEFKEPEITVPEPSLEP 479
>SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1501
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 388 GEEIHTRRRHGHSTRPLPQRDRTQNRVREMR 480
G H R+G RPLP D R R R
Sbjct: 689 GRSFHVHDRYGQDGRPLPNGDNLLGRRRSNR 719
>SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1184
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 380 SKGERAWCPSRTVPTCSQTSLPPPR*WCPSRASLP 276
S+G+ TV T Q SLPPP+ ++ SLP
Sbjct: 296 SQGQGLPFQRTTVVTAQQNSLPPPQFQVTAQVSLP 330
>SB_3802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +3
Query: 264 ATSDRETCSARAPSAGRRQ--TRLGACWN 344
+T DR+ CS+ GR+Q + G CW+
Sbjct: 63 STRDRDWCSSHVGHTGRKQDISLAGGCWH 91
>SB_36381| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 311 EAADSFGSMLELSWKGTKPVRLSTGEERKFIQDGDTVTLRGHCLNATGLRIGFGRCEG 484
E DS +++ +SWK KP + T E K+ G + +NAT + R +G
Sbjct: 110 EKVDS--TLVRVSWKLLKPNCIITSYELKYHVTGKPANEKSVTINATRATVDIDRDKG 165
>SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1292
Score = 27.1 bits (57), Expect = 9.4
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Frame = +2
Query: 44 TLEALRPFIVDNFPQNPTPFPYLRHDDKFNFDIKLEVDIQTEKSPVVTTVCRSNYRYM-- 217
T E L + DN +P PF N ++ Q + + R + +M
Sbjct: 384 TFETLELVVPDNEYNSPVPFVI-----GTNLSLRCRRSCQMAQGKLFPQNARISATWMCV 438
Query: 218 YWTVKQ--QLAQQTITGCNLRPGDLLGSGTISGEAADSFGSMLELSWKGTK---PVRLS 379
Y ++KQ ++ + GCN++ G+G + + S++ L KGTK PV L+
Sbjct: 439 YRSLKQFAKVFGEETDGCNVKVLIETGAGRSNSMGLSATPSLISLPGKGTKCRVPVELT 497
>SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1270
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 328 WEHVGTVLEGHQARSPFDW*GEEIHT 405
WE+VG V GH W G +HT
Sbjct: 45 WENVGHVESGHVTLQQIIWPGGVVHT 70
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,403,132
Number of Sequences: 59808
Number of extensions: 416132
Number of successful extensions: 1258
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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