Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39852-6|AAK39259.1|  418|Caenorhabditis elegans Hypothetical pr...   200   4e-52
Z92790-5|CAI79208.1|  169|Caenorhabditis elegans Hypothetical pr...    35   0.031
U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical p...    30   0.87 
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    30   1.2  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    30   1.2  
U41552-7|AAU05560.1| 1174|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U41552-6|AAU05561.1| 1203|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical ...    29   2.0  
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ...    29   2.0  
AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical...    28   3.5  
AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisome...    28   3.5  
U58761-5|ABC71835.1|  148|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U58761-4|AAB00715.1|  631|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81134-7|CAD56602.1|  879|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81134-6|CAB03450.2|  795|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL117202-32|CAD56611.1|  879|Caenorhabditis elegans Hypothetical...    27   8.1  
AL117202-31|CAD56610.1|  795|Caenorhabditis elegans Hypothetical...    27   8.1  

>U39852-6|AAK39259.1|  418|Caenorhabditis elegans Hypothetical
           protein K10C2.4 protein.
          Length = 418

 Score =  200 bits (489), Expect = 4e-52
 Identities = 91/165 (55%), Positives = 119/165 (72%)
 Frame = +2

Query: 5   AKNLGSTISPWIVTLEALRPFIVDNFPQNPTPFPYLRHDDKFNFDIKLEVDIQTEKSPVV 184
           AK+  +T+SPW+V++EALRP+ V+N  Q+P P  YL HDD F  DI L V I+ E   V 
Sbjct: 254 AKSFATTVSPWVVSIEALRPYFVENPVQDPVPPAYLHHDDPFTLDINLAVSIRPEGDAVD 313

Query: 185 TTVCRSNYRYMYWTVKQQLAQQTITGCNLRPGDLLGSGTISGEAADSFGSMLELSWKGTK 364
             VC++N++++YWT+KQQLA  T+ GCNLR GDLLGSGT+SG    ++GSMLELSW+G K
Sbjct: 314 HIVCKTNFKHLYWTLKQQLAHHTVNGCNLRAGDLLGSGTVSGPEEGAYGSMLELSWRGAK 373

Query: 365 PVRLSTGEERKFIQDGDTVTLRGHCLNATGLRIGFGRCEGKLLPA 499
            V + + E RKF++DGD V L G C    G+RIGFG C GK+LPA
Sbjct: 374 EVPVGS-EIRKFLKDGDEVNLSGVC-EKNGVRIGFGECRGKVLPA 416


>Z92790-5|CAI79208.1|  169|Caenorhabditis elegans Hypothetical
           protein H03G16.6 protein.
          Length = 169

 Score = 35.1 bits (77), Expect = 0.031
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -3

Query: 384 PVERRTGLVPFQDSSNMLPNESAASPLMVPEPSKSPGLRLQPVIVCCASCCFTV 223
           P  R+  L+P   +S+  P  SA +P+ VPE  K    R   ++ CC   C T+
Sbjct: 101 PKVRKEALMP---TSSPTPGTSAYTPITVPEQQKRAPTRTAKILSCCRIGCITL 151


>U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical
           protein B0207.1 protein.
          Length = 564

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 24/79 (30%), Positives = 32/79 (40%)
 Frame = -3

Query: 492 NSFPSHLPNPILSPVALRQWPRRVTVSPSCMNFLSSPVERRTGLVPFQDSSNMLPNESAA 313
           NS P   PNP   P A R    ++   P   N + +P +  TGL P          E   
Sbjct: 33  NSVPVQNPNPNQIPPAPRPIVNQIQY-PKPTNPVQNPNKLSTGLPPMTMMLPPTVQEPLP 91

Query: 312 SPLMVPEPSKSPGLRLQPV 256
           +P+  P   + PG  L PV
Sbjct: 92  TPVKTPPLPRPPG-NLNPV 109


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
 Frame = -3

Query: 483  PSHLP-NPILSPVALRQWPRRVTVSPSCMNFLSSPVERRTGLVPFQDSSNMLPNE---SA 316
            P + P +P  SP +    P   T +P+     SSP    T       S +  P+    S 
Sbjct: 1742 PQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSP 1801

Query: 315  ASPLMVPEPSKSPGLRLQ 262
             SP   P PS+ PG   Q
Sbjct: 1802 TSPTYTPSPSEQPGTSAQ 1819


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
 Frame = -3

Query: 483  PSHLP-NPILSPVALRQWPRRVTVSPSCMNFLSSPVERRTGLVPFQDSSNMLPNE---SA 316
            P + P +P  SP +    P   T +P+     SSP    T       S +  P+    S 
Sbjct: 1749 PQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSP 1808

Query: 315  ASPLMVPEPSKSPGLRLQ 262
             SP   P PS+ PG   Q
Sbjct: 1809 TSPTYTPSPSEQPGTSAQ 1826


>U41552-7|AAU05560.1| 1174|Caenorhabditis elegans Hypothetical
           protein K07E3.7a protein.
          Length = 1174

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
 Frame = +2

Query: 263 CNLRPGDLL-GSGTISGEAADSFGSMLELSWKGTKPVRLSTGEERKFIQDGDTV----TL 427
           C L  G ++     ++GE+     + L+ + +    +RLS+   R  +  G TV      
Sbjct: 288 CLLMNGTVIVNEAMLTGESVPVTKASLKEADECGPEIRLSSEHNRHTLFSGTTVLQTRNY 347

Query: 428 RGHCLNATGLRIGFGRCEGKLLPAIPFPR 514
           +G  + A  +R GF   +G+L+ +I +P+
Sbjct: 348 KGQPVMARVIRTGFSTLKGQLVRSIMYPK 376


>U41552-6|AAU05561.1| 1203|Caenorhabditis elegans Hypothetical
           protein K07E3.7b protein.
          Length = 1203

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
 Frame = +2

Query: 263 CNLRPGDLL-GSGTISGEAADSFGSMLELSWKGTKPVRLSTGEERKFIQDGDTV----TL 427
           C L  G ++     ++GE+     + L+ + +    +RLS+   R  +  G TV      
Sbjct: 317 CLLMNGTVIVNEAMLTGESVPVTKASLKEADECGPEIRLSSEHNRHTLFSGTTVLQTRNY 376

Query: 428 RGHCLNATGLRIGFGRCEGKLLPAIPFPR 514
           +G  + A  +R GF   +G+L+ +I +P+
Sbjct: 377 KGQPVMARVIRTGFSTLKGQLVRSIMYPK 405


>AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical
           protein Y46G5A.1b protein.
          Length = 1021

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 391 EEIHTRRRHGHSTRPLPQRDRTQNRVRE 474
           E +HT RRH H T    Q  R  +R RE
Sbjct: 85  ERVHTERRHHHQTSSPSQYPRPPSRDRE 112


>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
           protein Y46G5A.1a protein.
          Length = 1085

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 391 EEIHTRRRHGHSTRPLPQRDRTQNRVRE 474
           E +HT RRH H T    Q  R  +R RE
Sbjct: 85  ERVHTERRHHHQTSSPSQYPRPPSRDRE 112


>AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical
           protein Y56A3A.27 protein.
          Length = 759

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 22/78 (28%), Positives = 30/78 (38%)
 Frame = -3

Query: 510 GKGMAGNSFPSHLPNPILSPVALRQWPRRVTVSPSCMNFLSSPVERRTGLVPFQDSSNML 331
           G G  G   P+  P P   P   R  P R ++SP+  N    P E  T +V   +    +
Sbjct: 630 GPGGGGGGGPTGPPAPPKPPAKPRGRPPRKSISPAVKNGHDDP-ENDT-IVTLSEVFGSM 687

Query: 330 PNESAASPLMVPEPSKSP 277
            N   A     P  S +P
Sbjct: 688 SNPKPARKPRAPRKSAAP 705


>AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA
           topoisomerase III protein.
          Length = 759

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 22/78 (28%), Positives = 30/78 (38%)
 Frame = -3

Query: 510 GKGMAGNSFPSHLPNPILSPVALRQWPRRVTVSPSCMNFLSSPVERRTGLVPFQDSSNML 331
           G G  G   P+  P P   P   R  P R ++SP+  N    P E  T +V   +    +
Sbjct: 630 GPGGGGGGGPTGPPAPPKPPAKPRGRPPRKSISPAVKNGHDDP-ENDT-IVTLSEVFGSM 687

Query: 330 PNESAASPLMVPEPSKSP 277
            N   A     P  S +P
Sbjct: 688 SNPKPARKPRAPRKSAAP 705


>U58761-5|ABC71835.1|  148|Caenorhabditis elegans Hypothetical
           protein C01F1.3b protein.
          Length = 148

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 483 PSHLPNPILSPVALRQWPRRVTVSPSCMNFLSSPVERRTG 364
           P +L + I+    L   P  +T+ P CMN + + +E+R+G
Sbjct: 27  PRNLLSKIIKYKELFDIPVSLTILPDCMNAMCNLMEQRSG 66


>U58761-4|AAB00715.1|  631|Caenorhabditis elegans Hypothetical
           protein C01F1.3a protein.
          Length = 631

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 483 PSHLPNPILSPVALRQWPRRVTVSPSCMNFLSSPVERRTG 364
           P +L + I+    L   P  +T+ P CMN + + +E+R+G
Sbjct: 510 PRNLLSKIIKYKELFDIPVSLTILPDCMNAMCNLMEQRSG 549


>Z81134-7|CAD56602.1|  879|Caenorhabditis elegans Hypothetical
           protein T28D6.5b protein.
          Length = 879

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 139 VEIEFIVVSQVGERSRVLREV-VDDERT 59
           ++I++I+ SQVG  SRVL  + +D  RT
Sbjct: 310 IKIKYIIASQVGPLSRVLGGIKIDSVRT 337


>Z81134-6|CAB03450.2|  795|Caenorhabditis elegans Hypothetical
           protein T28D6.5a protein.
          Length = 795

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 139 VEIEFIVVSQVGERSRVLREV-VDDERT 59
           ++I++I+ SQVG  SRVL  + +D  RT
Sbjct: 310 IKIKYIIASQVGPLSRVLGGIKIDSVRT 337


>AL117202-32|CAD56611.1|  879|Caenorhabditis elegans Hypothetical
           protein T28D6.5b protein.
          Length = 879

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 139 VEIEFIVVSQVGERSRVLREV-VDDERT 59
           ++I++I+ SQVG  SRVL  + +D  RT
Sbjct: 310 IKIKYIIASQVGPLSRVLGGIKIDSVRT 337


>AL117202-31|CAD56610.1|  795|Caenorhabditis elegans Hypothetical
           protein T28D6.5a protein.
          Length = 795

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 139 VEIEFIVVSQVGERSRVLREV-VDDERT 59
           ++I++I+ SQVG  SRVL  + +D  RT
Sbjct: 310 IKIKYIIASQVGPLSRVLGGIKIDSVRT 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,195,942
Number of Sequences: 27780
Number of extensions: 296919
Number of successful extensions: 1030
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)