Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.4  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.7  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 188 WSPPGTFQSECPLPV 144
           W+PP  F+S C + V
Sbjct: 135 WTPPAIFKSSCEIDV 149


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 46  LRGTASVHRRQLPSEPDSVPLLETRR*IQFRHQTGSGHSD*KVPGGDH 189
           L+  A  H+  +   PDS PL+E+    Q  HQ  + H   +   G H
Sbjct: 143 LQAAAVDHQGSVLDGPDSPPLVES----QMHHQMHTQHPHMQPQQGQH 186


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 188 WSPPGTFQSECPLPV 144
           W PP  +QS C + V
Sbjct: 141 WVPPAIYQSSCTIDV 155


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 191 QWSPPGTFQSECPLPV 144
           +W PP  ++S C + V
Sbjct: 142 EWKPPAIYKSSCEIDV 157


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 191 QWSPPGTFQSECPLPV 144
           +W PP  ++S C + V
Sbjct: 138 EWKPPAIYKSSCEIDV 153


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 188 WSPPGTFQSECPLPV 144
           W PP  ++S C + V
Sbjct: 143 WQPPAVYKSSCSIDV 157


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 227 PSNTCTDSLNGKQWSPPGTFQSECPLPV 144
           P+N    +     + PPG F+S C + +
Sbjct: 125 PTNVVVKNNGTCLYVPPGIFKSTCKIDI 152


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 188 WSPPGTFQSECPLPV 144
           W PP  ++S C + V
Sbjct: 148 WKPPAIYKSSCEINV 162


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 182 PPGTFQSECPLPV 144
           PPG F+S C + V
Sbjct: 103 PPGIFKSTCKMDV 115


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -3

Query: 300 VPEPSKSPGL-RLQPVIVCCA 241
           +PEPSK+P +   Q   V C+
Sbjct: 373 IPEPSKNPAMGHWQMSCVACS 393


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,821
Number of Sequences: 438
Number of extensions: 3971
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)