Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G03f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12050.1 68414.m01391 fumarylacetoacetase, putative similar t...   181   2e-46
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    32   0.27 
At3g56990.1 68416.m06344 glycine-rich protein conserved hypothet...    29   1.4  
At5g47390.1 68418.m05840 myb family transcription factor contain...    29   1.9  
At1g49210.1 68414.m05517 zinc finger (C3HC4-type RING finger) fa...    29   1.9  
At4g34340.1 68417.m04880 expressed protein                             27   7.7  
At4g03260.1 68417.m00445 leucine-rich repeat family protein cont...    27   7.7  
At3g62080.1 68416.m06975 SNF7 family protein contains Pfam domai...    27   7.7  
At3g27320.1 68416.m03414 expressed protein low similarity to PrM...    27   7.7  
At3g17970.1 68416.m02286 chloroplast outer membrane translocon s...    27   7.7  
At2g44000.1 68415.m05471 expressed protein                             27   7.7  
At2g43510.1 68415.m05406 trypsin inhibitor, putative similar to ...    27   7.7  
At1g49200.1 68414.m05516 zinc finger (C3HC4-type RING finger) fa...    27   7.7  

>At1g12050.1 68414.m01391 fumarylacetoacetase, putative similar to
           fumarylacetoacetase (Fumarylacetoacetate hydrolase,
           Beta-diketonase, FAA)[Rattus norvegicus]
           SWISS-PROT:P25093
          Length = 421

 Score =  181 bits (441), Expect = 2e-46
 Identities = 82/166 (49%), Positives = 110/166 (66%)
 Frame = +2

Query: 8   KNLGSTISPWIVTLEALRPFIVDNFPQNPTPFPYLRHDDKFNFDIKLEVDIQTEKSPVVT 187
           K+ G+TISPWIVTL+AL PF      Q+P P PYL   +  N+DI LEV ++        
Sbjct: 258 KSFGTTISPWIVTLDALEPFGCQAPKQDPPPLPYLAEKESVNYDISLEVQLKPSGRDDSC 317

Query: 188 TVCRSNYRYMYWTVKQQLAQQTITGCNLRPGDLLGSGTISGEAADSFGSMLELSWKGTKP 367
            + +SN++ +YWT+ QQLA  T+ GCNLRPGDLLG+GTISG   DS+G +LEL+W G KP
Sbjct: 318 VITKSNFQNLYWTITQQLAHHTVNGCNLRPGDLLGTGTISGPEPDSYGCLLELTWNGQKP 377

Query: 368 VRLSTGEERKFIQDGDTVTLRGHCLNATGLRIGFGRCEGKLLPAIP 505
           + L+ G  + F++DGD VT  G C    G  +GFG C GK++P+ P
Sbjct: 378 LSLN-GTTQTFLEDGDQVTFSGVC-KGDGYNVGFGTCTGKIVPSPP 421


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 24/84 (28%), Positives = 35/84 (41%)
 Frame = -1

Query: 395 SSPHQSKGERAWCPSRTVPTCSQTSLPPPR*WCPSRASLPV*GCSPL*FAAPAAVSPSNT 216
           SSP  S    +  PS   P+    S PPP    PS    P    SPL     +++SPS +
Sbjct: 32  SSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPPPSSSPL-----SSLSPSLS 86

Query: 215 CTDSLNGKQWSPPGTFQSECPLPV 144
            +   +    +PP +     P P+
Sbjct: 87  PSPPSSSPSSAPPSSLSPSSPPPL 110



 Score = 27.5 bits (58), Expect = 5.8
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = -1

Query: 392 SPHQSKGERAWCPSRTVPTCSQTSLPPPR*WCPSRASLPV*GCSPL*FAAPAAVSPSNTC 213
           SP  S    +  PS   P+    S PPP    PS    P    SPL   +P+  S S+T 
Sbjct: 82  SPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPS--SSSSTY 139

Query: 212 TDSLN 198
           ++  N
Sbjct: 140 SNQTN 144


>At3g56990.1 68416.m06344 glycine-rich protein conserved
           hypothetical protein SPCC330.09 - Schizosaccharomyces
           pombe, PIR:T41319
          Length = 711

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 4   SQEPRQYHLAVDSDLRGTASVHRRQLPSEPDSVPLLETRR*IQFRHQTGSGHSD*KV-PG 180
           S++ R   L    D R  A+ H R   ++ DS+P+ E  + I+ R     G  D K  PG
Sbjct: 573 SKKARTPKLYEVKDERHAAAYHNRTSLAKEDSLPMGERVKAIENRRGNFGGSKDIKFGPG 632

Query: 181 GDHCLPFK 204
           G     FK
Sbjct: 633 GSREFSFK 640


>At5g47390.1 68418.m05840 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 365

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +1

Query: 7   QEPRQYHLAVDSDLRGTASVHRRQLPSEPDSVPLLE 114
           QEP + ++ V+++++G  S+H+   PS   +  +LE
Sbjct: 173 QEPEEDNIPVETEMQGADSIHQTLAPSSLHAPSILE 208


>At1g49210.1 68414.m05517 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 225

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 396 FLSSPVERRTGLVPFQDSSNMLPNESAASPLMVPEPS-KSPGLRLQPVIVCCASCCFTVQ 220
           FL S V R+  L    D +++     A SPL+  E + K   L L  V++C   CC  + 
Sbjct: 17  FLGSFVTRKLLLHDPFDHNSLRVFAVAPSPLITHENNLKGNVLMLLSVLICGIICCLGLH 76

Query: 219 YMYR 208
           Y+ R
Sbjct: 77  YIIR 80


>At4g34340.1 68417.m04880 expressed protein
          Length = 353

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 314 AADSFGSMLELSWKGTKPVRLS-TGEERKFI 403
           A D F S     WK  KPV LS    E+KF+
Sbjct: 274 ARDGFSSEAHTEWKKNKPVALSKLRTEKKFL 304


>At4g03260.1 68417.m00445 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 677

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 29  SPWIVTLEALRPFIVDNFPQNPTPFPYLRHDDKFNFDIKLEVDIQTEKS 175
           SP +V   +L P I D+  +  +PF Y  H  + + D+      QT+KS
Sbjct: 202 SPLMVRSNSL-PNIADSSSEKSSPFKYSSHHSRSSDDLHALDTRQTDKS 249


>At3g62080.1 68416.m06975 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 423

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +2

Query: 98  PFPYLRHDDKFNFDIKLEVDIQTEKSPVV--TTVCRSNYRYMYWTVKQQLAQQTITGCNL 271
           P+P +  +D     ++LE+D+++E S V+  T+    +   M+  +K    +QT+     
Sbjct: 348 PYPDIDDEDIEEELLELEMDLESESSQVLPATSDTADSLTEMFSELKLGKTKQTLEEQAT 407

Query: 272 RPGDLLGSGTISGEAA 319
            P  +  SG    EAA
Sbjct: 408 EPAQMKDSGKKILEAA 423


>At3g27320.1 68416.m03414 expressed protein low similarity to PrMC3
           [Pinus radiata] GI:5487873
          Length = 460

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +2

Query: 194 CRSNYRYMYWTVKQ-QLAQ-QTITGCNLRPGDLLGSGTISGEAADSFGSMLELSW 352
           C   ++ + W  KQ  LA+     G + RPG  +    ++    D+FG+ L   W
Sbjct: 219 CEDGFKVLKWLGKQANLAECNKSMGNSRRPGGEVKKSEVNKHIVDAFGASLVEPW 273


>At3g17970.1 68416.m02286 chloroplast outer membrane translocon
           subunit, putative similar to Toc64 [Pisum sativum]
           GI:7453538; contains Pfam profile PF00515 TPR Domain
          Length = 589

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 453 PVALRQWPRRVTVSPSCMNFLSSPVERRTGLV 358
           P A ++ PR++ ++  C   L  PV+R T +V
Sbjct: 223 PFATQRNPRQIILADDCFQLLKIPVDRITQVV 254


>At2g44000.1 68415.m05471 expressed protein
          Length = 209

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
 Frame = +2

Query: 251 TITGCNLRPGDLLGSGTISGEAADSFGSM-----LELSWKGTK--PVRLSTGEERKFIQD 409
           T  G  L  GD++G   I+G+   SFG +      E++++G +  PV L    ER+ I  
Sbjct: 109 TSRGEILYNGDVVGEMRINGQRVASFGDLRTEVSAEVAYRGNQKSPVWLKNDIERRLIIL 168

Query: 410 GDTVTLRG 433
                LRG
Sbjct: 169 ETRAKLRG 176


>At2g43510.1 68415.m05406 trypsin inhibitor, putative similar to
           SP|P26780 Trypsin inhibitor 2 precursor (MTI-2) {Sinapis
           alba}
          Length = 89

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 401 IQDGDTVTLRGH-CLNATGLRIGFGRCEGKLLPAIPFPRMK 520
           I D   +  +G+ CL   G  +GFG C  ++ P I + R +
Sbjct: 19  ISDVPEIEAQGNECLKEYGGDVGFGFCAPRIFPTICYTRCR 59


>At1g49200.1 68414.m05516 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 226

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 318 AASPLMVPEPSKSPG-LRLQPVIVCCASCCFTVQYMYR*FERQT 190
           A SPL+  E + S   L L  V++C   CC  + Y+ R   R+T
Sbjct: 44  APSPLITHENNLSGNVLMLLSVLICGIICCLGLHYIIRCAFRRT 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,716,033
Number of Sequences: 28952
Number of extensions: 284996
Number of successful extensions: 883
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)