Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   3.3  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   5.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   5.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 441 PEEGHGVEDITTRHIFSYKIVT 506
           P EG  + D   RHI    I+T
Sbjct: 364 PSEGEDISDYKFRHITEITILT 385


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 295 SCHTASDIPGNLHTLPGLCLSLLG 224
           S  T  ++   LHT+  +C+  +G
Sbjct: 15  SAMTLDELKSGLHTVQSVCMKEIG 38


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 170 QRRRARSCSHSKSSFPSTAKQRKTKTRER 256
           +R+R  S   ++S   S A   KTK R +
Sbjct: 215 KRKRKSSTIENESETESNASSTKTKMRRK 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,441
Number of Sequences: 438
Number of extensions: 2296
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)