Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    27   2.2  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   3.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   3.0  
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    25   5.2  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    25   6.8  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    25   9.0  

>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +1

Query: 148 KHRHIFYKVNSSSINFEVKADNAAVGLAKEAGMKCDYWVVLGDRSFIHAQNSGIQFAHTP 327
           K ++ F +  S   NFE        G+  +A    DY+++    +F    N  I   +  
Sbjct: 27  KKKYFFNREGSGIDNFETD------GMVFQASKAFDYYLLT---TFKDRVNEIINEQNEE 77

Query: 328 NIISNSEYRKFWISWS 375
           N+I  S + K W  W+
Sbjct: 78  NVIDQSRWSKLWRIWN 93


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 218  QWDLLKKLE*NVTIGLSLETDHSFMHRI 301
            +W  L ++  N T GL +ET H F+ R+
Sbjct: 1064 KWQELLQIRDNPTHGLLVETKHPFIKRV 1091


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 218  QWDLLKKLE*NVTIGLSLETDHSFMHRI 301
            +W  L ++  N T GL +ET H F+ R+
Sbjct: 1064 KWQELLQIRDNPTHGLLVETKHPFIKRV 1091


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/36 (22%), Positives = 22/36 (61%)
 Frame = +1

Query: 262 VVLGDRSFIHAQNSGIQFAHTPNIISNSEYRKFWIS 369
           ++ GDRS ++     +  + + N+++N  ++ FW++
Sbjct: 281 LIAGDRSNVNVIAHELAHSWSGNLVTNESWQCFWLN 316


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 187 INFEVKADNAAVGLAKEAGMKCDYWVVLGDRSFIHAQN 300
           +    +A    V L KE     D W +LG   ++ AQN
Sbjct: 219 VEMHEEAHQLLVYLQKEDDQILDIWYLLGWNCYVEAQN 256


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 295 QNSGIQFAHTPNIISNSE 348
           QNS I  A TP  +SNSE
Sbjct: 258 QNSSISQAATPRTVSNSE 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,864
Number of Sequences: 5004
Number of extensions: 39596
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)