Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51815| Best HMM Match : RVT_1 (HMM E-Value=0.23)                    29   1.8  
SB_40909| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_41267| Best HMM Match : Plasmid_parti (HMM E-Value=3.1)             28   5.4  
SB_37501| Best HMM Match : SCP (HMM E-Value=1.2e-19)                   28   5.4  
SB_34209| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_26300| Best HMM Match : Nebulin (HMM E-Value=5.1)                   27   9.4  

>SB_51815| Best HMM Match : RVT_1 (HMM E-Value=0.23)
          Length = 297

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 507 FXPPVCRCYTSVHRKCEIIKILFS 436
           F  PV RCYT V ++C I   LF+
Sbjct: 224 FLTPVFRCYTGVKQRCMISPTLFN 247


>SB_40909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 343 SEYRKFWISWSKNGVCLGQNGELEPIMKLECREQNFNY 456
           S +R+ W+  +K    LGQN   E I ++E   +N +Y
Sbjct: 36  STWRRLWLYLAKAEKELGQNISAEQIAEMEANLENIDY 73


>SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/32 (28%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
 Frame = +1

Query: 319 HTPNIISNSEYRKFWISW-SKNGVCLGQNGEL 411
           H PN++SN++   F+  + +++ +C+G++G++
Sbjct: 16  HLPNVLSNADKEDFFKHFGARSVICMGRSGKM 47


>SB_41267| Best HMM Match : Plasmid_parti (HMM E-Value=3.1)
          Length = 133

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 115 MGDIIEITTWPKHRHIFYKVNS-SSINFEVKADNAAVGLAKE 237
           +GD    TT  KH H +   N+  +  +EV   NA  G+ KE
Sbjct: 15  LGDASRCTTTKKHLHTYVDTNTRGAYTYEVIPRNADNGVLKE 56


>SB_37501| Best HMM Match : SCP (HMM E-Value=1.2e-19)
          Length = 351

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 229 AKEAGMKCDYWVVLGDRSFI 288
           A+E  MKC Y+V  GD SF+
Sbjct: 183 AEEDKMKCTYYVPFGDTSFV 202


>SB_34209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 112 IMGDIIEITTWPKHRHIFYKVNSSSINFEVKADNAAVGL 228
           + G++++I    +HR IF K    S+NF ++ ++  V +
Sbjct: 77  VRGNLLKIERNRRHRKIFGKFAKKSLNFNLRPESFLVSV 115


>SB_26300| Best HMM Match : Nebulin (HMM E-Value=5.1)
          Length = 116

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 307 IQFAHTPNIISNSEYRKFWISWSKNGVCLGQNGEL 411
           ++ A    I+ + +YR  W+SW   G+ +     L
Sbjct: 78  LRHAQLAEIVDDKKYRSIWVSWVPWGLAMRTGASL 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,795,699
Number of Sequences: 59808
Number of extensions: 271898
Number of successful extensions: 543
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)