Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46540.1 68418.m05730 ABC transporter family protein contains...    30   0.82 
At3g17740.1 68416.m02264 expressed protein                             27   5.8  

>At5g46540.1 68418.m05730 ABC transporter family protein contains
           Pfam profile: PF00005 ABC transporter; similar to
           multidrug-resistant protein CjMDR1 GI:14715462 from
           [Coptis japonica]
          Length = 1248

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 112 IMGDIIEITTWPKHRHIFYKVNSSSINFEVKADNAAVGLAKEAGMKCDYWVVLGDR 279
           +MG +I +  +  H H+F +V+  ++ F   A  A  G+     + C  W+V G+R
Sbjct: 55  LMGQLINVFGFSDHDHVFKEVSKVAVKFLYLA--AYAGVVSFLQVSC--WMVTGER 106


>At3g17740.1 68416.m02264 expressed protein
          Length = 1149

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 331 IISNSEYRKFWISWSKNGVCLGQNGELEPIMKLECREQN 447
           +   S+ R F   WS NG  +G+ G    ++ LE  E+N
Sbjct: 472 LTEQSKLRLFEHFWSSNGARVGEEGAFGWLLWLEKEEEN 510


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,397,004
Number of Sequences: 28952
Number of extensions: 194795
Number of successful extensions: 346
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)