Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304F11f
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           31   0.031
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    23   4.7  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    23   8.2  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 30.7 bits (66), Expect = 0.031
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = -3

Query: 417 HQSDINVISWNGKEPFIASGGDDGFLHIWDLRQFTNSTPVGTFKHHTAPVTSVEW 253
           H+SD+ ++ WN     +AS    G + +W   ++     V        PVT   W
Sbjct: 63  HRSDVILVKWNEPYQKLASCDSSGIIFVW--IKYEGRWSVELINDRNTPVTHFSW 115


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 82  TLAQATTWRYCGXSTY 35
           T+AQ  TW  CG  +Y
Sbjct: 183 TIAQPGTWNVCGDYSY 198


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 7/31 (22%), Positives = 18/31 (58%)
 Frame = -1

Query: 350 MVFYISGT*DSLQIVLQWVHSNITLHQLHQW 258
           ++F ++ +  S  ++L + H N   H++ +W
Sbjct: 284 IMFMVASSVVSTILILNYHHRNSDTHEMSEW 314


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 501,908
Number of Sequences: 2352
Number of extensions: 9386
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)