Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304F11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.47 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 215 SPADAN-TLGSVXCHSTDVTGAV*CLNVPTGVLFVNCLKSQICRKPSSP 358
           SPAD +  L ++    T V  A     +PTG L+  C +  I    S+P
Sbjct: 521 SPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNP 569


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 448 LWCCSSIPYSLWSLSTEH-VANTFL 519
           LW  S +P+  W LST H +A  FL
Sbjct: 100 LW--SLVPHMAWQLSTAHLLAQLFL 122


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/31 (22%), Positives = 18/31 (58%)
 Frame = -1

Query: 350 MVFYISGT*DSLQIVLQWVHSNITLHQLHQW 258
           ++F ++ +  S  ++L + H N   H++ +W
Sbjct: 301 IMFMVASSVVSTILILNYHHRNADTHEMSEW 331


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -3

Query: 120 LFIHQGQTDIKELHWHKQLPGV 55
           L++H+ +++ +   +H+QL GV
Sbjct: 731 LYLHRARSESEFEMYHQQLQGV 752


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,338
Number of Sequences: 438
Number of extensions: 2575
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)