Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304F10f
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    31   0.074
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    28   0.69 
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    26   2.1  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    26   2.1  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   6.4  

>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 31.1 bits (67), Expect = 0.074
 Identities = 17/42 (40%), Positives = 30/42 (71%)
 Frame = +1

Query: 79  HKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVKVWRRLLD 204
           H L+M  ++  +++DE Q  KEEMKR+ +LR +++  R+LL+
Sbjct: 13  HPLLMRNQEK-VWKDE-QAHKEEMKRVEQLRREIEEERQLLE 52


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.9 bits (59), Expect = 0.69
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 7   KIFSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEM 150
           KI SA    +NE  I +Y RH ++HK  +       + DE +    E+
Sbjct: 255 KIASANAGSSNEISIPHYQRHKKSHKGAIQDSSIQSYLDEEEKLSREL 302


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 235 TPLILFIPPSYQATASKP*LYLGVLAISSSPP*SLDAHHGI-DHNLSNSSSVYASPC 68
           TPL L  PP+ Q   SK  L   +L+I+     S+D +  I D NLS S SV    C
Sbjct: 394 TPLYLASPPALQVATSKN-LSQPILSIT-----SVDVNLVITDKNLSTSLSVQLREC 444


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 76  THKLMMNLRDYGLFRDEHQDFKEEMKRLRELR 171
           T K M+ L++   F+D+++  KEE KRL + R
Sbjct: 178 TQKQMLQLQNEN-FKDDYEKIKEENKRLYKER 208


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 156  SLHLLLKVLMLITE*TIISQIHHQFMRLHVSRIIVY-NFL 40
            SL + + V+ LI   +I+ +I H F   HV  +  Y NFL
Sbjct: 1110 SLGISIGVMFLIMSGSIVVEIIHWFFSEHVETLHDYSNFL 1149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,491,954
Number of Sequences: 5004
Number of extensions: 23874
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)