Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304F10f
         (423 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    24   2.0  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   3.5  
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        23   6.0  

>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 192 PPNLDFTSEFSQSLHLLLKVLMLITE 115
           PP+  FTS     L L+LK +  IT+
Sbjct: 457 PPHTCFTSSADYELALILKEIRFITD 482


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +1

Query: 70  METHKLMMNLRDYGLF---RDEHQDFKEEMKRLRELRGKVK-VWRRLLDKKAE*KE 225
           + T  L+    D+ L    R EHQ    E  ++R  RG+++   + L ++ AE +E
Sbjct: 599 LRTLNLLNRSTDHALLAQKRQEHQRLVRECDKIRNQRGQIENSIKELQERCAELRE 654


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 118 RDEHQDFKEEMKRLRELRGKVKVWRRLLDKKAE 216
           R +    +E+ +  REL+   ++ RR L +KAE
Sbjct: 140 RRDKAKVEEDQRHYRELKAADEIKRRELIQKAE 172


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 375,588
Number of Sequences: 2352
Number of extensions: 5451
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 35060166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)