Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304F10f
         (423 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC015462-1|AAH15462.1|  106|Homo sapiens mitochondrial ribosomal...    69   9e-12
AF151897-1|AAD34134.1|  106|Homo sapiens CGI-139 protein protein.      69   9e-12
AC006006-2|AAD43190.1|  106|Homo sapiens unknown protein.              69   9e-12
BC105793-1|AAI05794.1|  112|Homo sapiens MRPS33 protein protein.       67   3e-11
AB110793-1|BAD19022.1|   88|Homo sapiens synphilin-1f protein pr...    29   6.5  
BC067101-1|AAH67101.1| 1212|Homo sapiens MYOM3 protein protein.        29   8.5  
AL591178-3|CAH72090.1| 1437|Homo sapiens myomesin family, member...    29   8.5  

>BC015462-1|AAH15462.1|  106|Homo sapiens mitochondrial ribosomal
           protein S33 protein.
          Length = 106

 Score = 68.5 bits (160), Expect = 9e-12
 Identities = 32/61 (52%), Positives = 40/61 (65%)
 Frame = +1

Query: 1   VXKIFSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKV 180
           V K+FS  PL   +E   +YP H    +LM  LR  GL+RDEHQDF +E KRL++LRGK 
Sbjct: 33  VVKLFSELPLAKKKETYDWYPNHHTYAELMQTLRFLGLYRDEHQDFMDEQKRLKKLRGKE 92

Query: 181 K 183
           K
Sbjct: 93  K 93


>AF151897-1|AAD34134.1|  106|Homo sapiens CGI-139 protein protein.
          Length = 106

 Score = 68.5 bits (160), Expect = 9e-12
 Identities = 32/61 (52%), Positives = 40/61 (65%)
 Frame = +1

Query: 1   VXKIFSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKV 180
           V K+FS  PL   +E   +YP H    +LM  LR  GL+RDEHQDF +E KRL++LRGK 
Sbjct: 33  VVKLFSELPLAKKKETYDWYPNHHTYAELMQTLRFLGLYRDEHQDFMDEQKRLKKLRGKE 92

Query: 181 K 183
           K
Sbjct: 93  K 93


>AC006006-2|AAD43190.1|  106|Homo sapiens unknown protein.
          Length = 106

 Score = 68.5 bits (160), Expect = 9e-12
 Identities = 32/61 (52%), Positives = 40/61 (65%)
 Frame = +1

Query: 1   VXKIFSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKV 180
           V K+FS  PL   +E   +YP H    +LM  LR  GL+RDEHQDF +E KRL++LRGK 
Sbjct: 33  VVKLFSELPLAKKKETYDWYPNHHTYAELMQTLRFLGLYRDEHQDFMDEQKRLKKLRGKE 92

Query: 181 K 183
           K
Sbjct: 93  K 93


>BC105793-1|AAI05794.1|  112|Homo sapiens MRPS33 protein protein.
          Length = 112

 Score = 66.9 bits (156), Expect = 3e-11
 Identities = 31/61 (50%), Positives = 40/61 (65%)
 Frame = +1

Query: 1   VXKIFSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKV 180
           V K+FS  PL   +E   +YP H    +LM  LR  GL+RDEHQDF +E KRL++LRG+ 
Sbjct: 33  VVKLFSELPLAKKKETYDWYPNHHTYAELMQTLRFLGLYRDEHQDFMDEQKRLKKLRGEE 92

Query: 181 K 183
           K
Sbjct: 93  K 93


>AB110793-1|BAD19022.1|   88|Homo sapiens synphilin-1f protein
           protein.
          Length = 88

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 113 YSVMSIKTLRRR*RDCENSEVKSRFGGGCLIRRRNKKNKWR 235
           YSV S+KT+    R C+           C   R+N + KW+
Sbjct: 20  YSVTSLKTIPELCRRCDTQNEDRSATPSCRQSRQNSRRKWK 60


>BC067101-1|AAH67101.1| 1212|Homo sapiens MYOM3 protein protein.
          Length = 1212

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 70  METHKLMMNLRDYGLFRDEHQDFKEEMKRLREL 168
           ++TH+L+   RD+   R   ++  +E K LREL
Sbjct: 116 LQTHRLLRQRRDWKTLRRRTEEKVQEAKELREL 148


>AL591178-3|CAH72090.1| 1437|Homo sapiens myomesin family, member 3
           protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 70  METHKLMMNLRDYGLFRDEHQDFKEEMKRLREL 168
           ++TH+L+   RD+   R   ++  +E K LREL
Sbjct: 116 LQTHRLLRQRRDWKTLRRRTEEKVQEAKELREL 148


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,441,112
Number of Sequences: 237096
Number of extensions: 859177
Number of successful extensions: 1797
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1791
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3259265358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)