Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304F10f
         (423 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54271-7|CAA91037.1|  126|Caenorhabditis elegans Hypothetical pr...    46   1e-05
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    29   1.4  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    29   1.4  
U58744-2|AAL65789.1|   95|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AC006642-8|AAF39827.2|  365|Caenorhabditis elegans Laterally sym...    27   7.3  
AC006642-9|AAX88828.1|  339|Caenorhabditis elegans Laterally sym...    26   9.7  

>Z54271-7|CAA91037.1|  126|Caenorhabditis elegans Hypothetical
           protein F21D5.8 protein.
          Length = 126

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +1

Query: 1   VXKIFSARPLHTNEEII-HYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGK 177
           V ++ SA P  T E++   YYP     H L   LR +GLF D+H  F++    L+ +RGK
Sbjct: 49  VVRVMSAEPYETKEQLSPKYYPNLPMFHYLTKMLRFHGLFFDDHVVFRDVQDNLKIIRGK 108

Query: 178 V 180
           V
Sbjct: 109 V 109


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
           protein 68 protein.
          Length = 5079

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 73  ETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGK 177
           E  KLM +L +Y    ++ QDF+E+   LR LR +
Sbjct: 326 EVLKLMEDLIEYFAQPNDEQDFEEKQNHLRALRSR 360


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
           protein.
          Length = 5071

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 73  ETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGK 177
           E  KLM +L +Y    ++ QDF+E+   LR LR +
Sbjct: 447 EVLKLMEDLIEYFAQPNDEQDFEEKQNHLRALRSR 481


>U58744-2|AAL65789.1|   95|Caenorhabditis elegans Hypothetical
           protein F55F1.1 protein.
          Length = 95

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 138 KVLMLITE*TIISQIHHQFMRLHVSRIIVYNFLICVQ 28
           +V+ L +   +   IHH+F+ + V  +I YN L  VQ
Sbjct: 40  QVIQLESSAELRKYIHHEFLTMDVGGLIKYNHLEWVQ 76


>AC006642-8|AAF39827.2|  365|Caenorhabditis elegans Laterally
           symmetric (defectivein lateral asymmetry) protein 2,
           isoform a protein.
          Length = 365

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 8/35 (22%), Positives = 23/35 (65%)
 Frame = +1

Query: 16  SARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFR 120
           S+   H + + ++++ +HM+  ++MM+ +DY  ++
Sbjct: 24  SSSMTHGSNQSVYHHNQHMDDSEMMMDEQDYSQYQ 58


>AC006642-9|AAX88828.1|  339|Caenorhabditis elegans Laterally
           symmetric (defectivein lateral asymmetry) protein 2,
           isoform b protein.
          Length = 339

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 7/30 (23%), Positives = 21/30 (70%)
 Frame = +1

Query: 31  HTNEEIIHYYPRHMETHKLMMNLRDYGLFR 120
           H + + ++++ +HM+  ++MM+ +DY  ++
Sbjct: 3   HGSNQSVYHHNQHMDDSEMMMDEQDYSQYQ 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,392,096
Number of Sequences: 27780
Number of extensions: 135635
Number of successful extensions: 387
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)