Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304F10f
(423 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g49500.1 68418.m06126 signal recognition particle 54 kDa prot... 31 0.32
At5g43390.1 68418.m05304 hypothetical protein strong similarity ... 31 0.32
At3g62680.1 68416.m07041 proline-rich family protein contains pr... 30 0.56
At3g45290.1 68416.m04890 seven transmembrane MLO family protein ... 28 2.3
At3g02920.1 68416.m00287 replication protein-related similar to ... 28 3.0
At5g43400.1 68418.m05305 expressed protein strong similarity to ... 27 4.0
At5g50210.1 68418.m06219 quinolinate synthetase A-related contai... 27 5.2
At1g33170.1 68414.m04096 dehydration-responsive family protein s... 27 5.2
At5g56510.1 68418.m07052 pumilio/Puf RNA-binding domain-containi... 26 9.1
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi... 26 9.1
At3g55830.1 68416.m06203 glycosyltransferase family protein 47 s... 26 9.1
>At5g49500.1 68418.m06126 signal recognition particle 54 kDa protein
2 / SRP54 (SRP-54B) identical to SP|P49966 Signal
recognition particle 54 kDa protein 2 (SRP54)
{Arabidopsis thaliana}
Length = 497
Score = 31.1 bits (67), Expect = 0.32
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +1
Query: 34 TNEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVKVWRRL 198
TNEE+ P+ ++M R G E + EE KRL + GKVK + L
Sbjct: 386 TNEELDSSNPKVFNESRIMRIARGSGRIVREVMEMLEEYKRLTTMWGKVKGLKNL 440
>At5g43390.1 68418.m05304 hypothetical protein strong similarity to
unknown protein (emb|CAB86628.1)
Length = 643
Score = 31.1 bits (67), Expect = 0.32
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 58 YPRHMETHKLMM-NLRDYGLFRDEHQDFKEEMKRLRELRGKVKVWRRLLDKK 210
Y H +T L + L D+G F+D + ++ + RGK +VWR+ + +K
Sbjct: 119 YKNHPKTLALNIPTLVDFGYFKDLPEILLRILEGQQTERGKTRVWRKRIQRK 170
>At3g62680.1 68416.m07041 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 313
Score = 30.3 bits (65), Expect = 0.56
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 250 YTKHTTPLILFIPPSYQATASKP*LYLGVLAISSSPP 140
YTK T P ++ PP Y+ T S P +Y + SS PP
Sbjct: 130 YTKPTIPPPVYTPPVYKPTPSPP-VYKKSPSYSSPPP 165
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 250 YTKHTTPLILFIPPSYQATASKP 182
YTK T P ++ PP Y+ T S P
Sbjct: 85 YTKPTIPPPVYTPPVYKPTLSPP 107
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 250 YTKHTTPLILFIPPSYQATASKP 182
YTK T P ++ PP Y+ T S P
Sbjct: 61 YTKPTIPPPVYTPPVYKHTPSPP 83
>At3g45290.1 68416.m04890 seven transmembrane MLO family protein /
MLO-like protein 3 (MLO3) membrane protein Mlo3
[Arabidopsis thaliana] gi|14091576|gb|AAK53796; similar
to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221
[Hordeum vulgare][Barley]
Length = 508
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 96 IHHQFMRLHVSRIIVYNFLICVQRSSREDF 7
+ H F+ HVS +NF +QRS EDF
Sbjct: 245 LRHGFIFAHVSSNNAFNFQNYIQRSLHEDF 274
>At3g02920.1 68416.m00287 replication protein-related similar to
replication protein A 30kDa [Oryza sativa (japonica
cultivar-group)] GI:13516746; contains InterPro entry
IPR004365: OB-fold nucleic acid binding domain
Length = 278
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 10 IFSARPLHTNEEIIHYYPRHMETHKLMMNLRDYGLFRD 123
+FS RP+ EI+H++ M H LR + +D
Sbjct: 138 VFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQD 175
>At5g43400.1 68418.m05305 expressed protein strong similarity to
unknown protein (emb|CAB86628.1)
Length = 655
Score = 27.5 bits (58), Expect = 4.0
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 58 YPRHMETHKLMMN-LRDYGLFRDEHQDFKEEMKRLRELRGKVKVWRRLLDKK 210
Y H +T L + L D+G F+D + ++ RGK +VWR+ + +K
Sbjct: 129 YKNHPKTLALNVPALVDFGYFKDLPEILFRILEGQNMERGKNRVWRKRVQRK 180
>At5g50210.1 68418.m06219 quinolinate synthetase A-related contains
weak similarity to Swiss-Prot:P11458 quinolinate
synthetase A [Escherichia coli]
Length = 718
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 1 VXKIFSARPLHTNEEIIHYYPRH 69
+ K+F L TNEEI + +P+H
Sbjct: 442 IVKLFQQMTLMTNEEIANIHPKH 464
>At1g33170.1 68414.m04096 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 639
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 160 AISSSPP*SLD--AHHGIDHNLSNSSSVYASPC 68
++SSS P LD +HH ++ ++N + Y PC
Sbjct: 81 SLSSSEPVELDFESHHKLELKITNQTVKYFEPC 113
>At5g56510.1 68418.m07052 pumilio/Puf RNA-binding domain-containing
protein contains similarity to RNA-binding protein
Length = 596
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 262 LHINYTKHT--TPLILFIPPSYQATASKP*LY 173
LH HT +P LFI PSY + ++ P +Y
Sbjct: 65 LHFGIPNHTPESPHPLFINPSYHSPSNSPCVY 96
>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
protein similar to Hsc70-interacting protein (Hip) from
{Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
contains Pfam profile PF00515: tetratricopeptide repeat
(TPR) domain
Length = 441
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 79 HKLMMNLRDYGLFRDEHQDFKEEMKRLR 162
HKL + R Y R E +D K E RLR
Sbjct: 238 HKLEEHRRKYDRLRKEREDKKAERDRLR 265
>At3g55830.1 68416.m06203 glycosyltransferase family protein 47
similar to exostose-related protein 2, Homo sapiens,
PIR:JC5935 [SP|Q93063], EXTL2, Mus musculus
[GI:10443633]
Length = 334
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +2
Query: 2 WXKSSLL--DLCTQMRKLYTIILDTWRR 79
W SS+ D + RK YT++++TW+R
Sbjct: 56 WVNSSIAVADRISGSRKGYTLLMNTWKR 83
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,019,954
Number of Sequences: 28952
Number of extensions: 132175
Number of successful extensions: 374
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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