Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304F09f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               251   2e-67
SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)                 28   4.1  
SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)                     27   9.4  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  251 bits (615), Expect = 2e-67
 Identities = 118/146 (80%), Positives = 132/146 (90%)
 Frame = +2

Query: 83  VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKR 262
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL DYI+VKEKY+ YLPH+AGRYA KR
Sbjct: 69  VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHTAGRYAAKR 128

Query: 263 FRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSG 442
           FRKAQCPIVER+TNS+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENPLQVLV AIINSG
Sbjct: 129 FRKAQCPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPLQVLVNAIINSG 188

Query: 443 PREDSTRIGRAGTVRRQAVDVSPLRR 520
           PREDSTRIGRAGTVRRQAVDVSPLRR
Sbjct: 189 PREDSTRIGRAGTVRRQAVDVSPLRR 214



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +2

Query: 83  VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSL 187
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL
Sbjct: 6   VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISL 40


>SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)
          Length = 556

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 122 IPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 253
           IPE  L     C DV   +  LQ+++ + +KY  YL + A +Y+
Sbjct: 511 IPEEAL--NLECPDVDFRESVLQEFLLLDKKYESYLEYLALKYS 552


>SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 1/109 (0%)
 Frame = +2

Query: 20  NRKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYI 199
           +R+  +  E+ W+  ++  G +   T   P    +   +L   WS     V D ++ ++I
Sbjct: 619 DRQQRVRIEDEWSSQISPRGGIPQGTRLAPLLFAVLVNRLADEWSTRLKYVDDATVLEFI 678

Query: 200 SVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKL 343
                 Y   +     RYA +R  +      + +    + +G     KL
Sbjct: 679 PRNSPSYLPIVASGISRYATQRNMRLNPNKCKEMVIDFLHYGEQQKHKL 727


>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
          Length = 439

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 146 RWSCYDVQVSDMSLQDYISVKEKYAKYLP 232
           RWSC   Q  + +++ Y+  KE  ++ LP
Sbjct: 59  RWSCVTYQAKNQAVECYLPGKEPGSRVLP 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,911,654
Number of Sequences: 59808
Number of extensions: 356566
Number of successful extensions: 850
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)