Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304F07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    27   1.3  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    27   1.3  
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...    27   2.2  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   3.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   3.9  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   6.8  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   9.0  
SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    25   9.0  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.0  

>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 309 SPTNIVPNVFTPQPLRQTIPLPTNLP 386
           SP+ I P V TP P R   P PT +P
Sbjct: 584 SPSVIPPRVPTPVPGRTLSPKPTRIP 609


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +3

Query: 189 VQVYQAPLVAAFTVHQDANGLPKKVIPLYQ----QTHGQQLLRPS-PTNIVPNVFTPQPL 353
           VQ++  P+++ + V  D   LP K++ L +      H  Q  RP  P    P   +P  L
Sbjct: 502 VQIFSQPVLSKYIVGLDPKKLP-KILELSKDITVNAHPNQPSRPRLPRVASPLKTSPVKL 560

Query: 354 RQTIPLPTNLPNRN 395
             T   P+ LP+ N
Sbjct: 561 AVTPQAPSPLPSSN 574


>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 271 FINRLMANNY*GLHRLISCLTYSHLNH 351
           F N L+  +  GLH   +CL +SHL H
Sbjct: 254 FSNELICRDE-GLHTDFACLMFSHLKH 279


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +3

Query: 153 DGENIEDVDKRDVQVYQAPLVAAFTVHQ-DANGLPKKVIPLYQQTHGQQLLRPSPTNIVP 329
           D   +  VD  +V    +PL  + +++Q   N      I +      Q  + PS ++ VP
Sbjct: 265 DNPALHTVDSTNVNGSLSPLSNSSSINQVHQNETHGSTISVPNPNLSQ--MGPSHSSSVP 322

Query: 330 NVFTPQPLRQTIPLPTNLPNRN 395
           +  +P P +   P  T++P+ N
Sbjct: 323 SNLSPNPAQNENPSTTSIPSIN 344


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +3

Query: 252 PKKVIPLYQQT--HGQQLLRPSPTNIVPNVFTPQPLRQTIPLPTNLP 386
           P  ++P    T    Q+LL  SP    P V  P P    IP+P   P
Sbjct: 710 PSPLLPDVSDTVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAP 756


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 357 QTIPLPTNLPNRNINTQNEFI 419
           QTI +   LP  NI+T N F+
Sbjct: 869 QTIGIAKKLPESNISTSNHFL 889


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 270 LYQQTHGQQLLRPSPTNIVPNVFTPQPLRQTIPLPTNLPNRNIN 401
           +Y   +G   +  +  N   N+   QP RQ+     NLPN++ +
Sbjct: 44  MYAAEYGNANMMNTSENEPNNLAHSQPFRQSPSTQRNLPNQSFD 87


>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 433 FYKRSWKKNKGFLRSNCVSCSY 498
           F+K++    K  LR  CVSC Y
Sbjct: 58  FHKKAKVTKKVVLRLECVSCKY 79


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 424 ISSFYKRSWKKNKGFLRSNCVSCSYSKV 507
           I S+ K  W K   F+R   VS S  KV
Sbjct: 51  IDSYSKTQWSKTFTFVRGRTVSVSDPKV 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,838,650
Number of Sequences: 5004
Number of extensions: 35365
Number of successful extensions: 121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)