Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304F07f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,174... 33 0.18
02_01_0262 - 1734447-1735090,1735219-1735367,1735458-1735633,173... 31 0.56
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491... 29 1.7
06_01_0823 + 6216492-6217002,6217140-6218083 28 4.0
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 27 6.9
06_02_0169 - 12535102-12536062,12536949-12537646 27 9.1
06_02_0166 + 12522172-12522890,12523567-12524596 27 9.1
01_06_1180 + 35168811-35169089,35169224-35169287,35169401-35169570 27 9.1
>04_01_0150 +
1741639-1741742,1742432-1742543,1742856-1743594,
1743724-1743776,1743914-1743991,1744107-1744405,
1744660-1745476,1745576-1745842,1745987-1746181,
1746287-1746372,1746469-1746657,1747138-1747207,
1747399-1747552,1747706-1747832,1749158-1749254
Length = 1128
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 174 VDKRDVQVYQAPLVAAFTVHQDANGLPKKVIPLYQQTHGQQLLRPSPTNIVPNVFTPQPL 353
+ + ++ QA + T Q+++G +P + L+PS TN + FTP P+
Sbjct: 472 ISAKTSRMEQAIMTRTPTPQQESHGCHLLGVP--SSCFSPKALQPSSTNTIEECFTPSPV 529
Query: 354 RQTI-PLPTNLPN 389
QT+ P+ P+
Sbjct: 530 TQTVQPIQVASPH 542
>02_01_0262 -
1734447-1735090,1735219-1735367,1735458-1735633,
1735719-1735853,1737039-1737120,1737307-1737461
Length = 446
Score = 31.1 bits (67), Expect = 0.56
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 291 QQLLRPSPTNIVPNVFTPQPLRQTIPLPTNLPNRNI 398
QQ++RP PT P + QP+ + +P PT + N++I
Sbjct: 266 QQVIRPPPT---PTLMERQPIIRPLPTPTLMENQHI 298
>01_06_0747 -
31645136-31646521,31647870-31648142,31649080-31649148,
31649486-31649614
Length = 618
Score = 29.5 bits (63), Expect = 1.7
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +3
Query: 207 PLVAAFTVHQDANGLPKKVIPLYQQTHGQQLLRPSPTNIVPNVFTPQP-LRQTIPLPTNL 383
P+ A+ Q AN + P YQQ QQ +P+P + PQP Q P P
Sbjct: 301 PVHASSQQSQAANQTQPQSFPPYQQQWPQQSSQPAPAPVA----QPQPTFSQPFPPPVQQ 356
Query: 384 PNRNINTQ 407
P + NTQ
Sbjct: 357 PQLS-NTQ 363
>06_01_0823 + 6216492-6217002,6217140-6218083
Length = 484
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 212 SCGFHCSSRR*WTSQKGYTTLSTDSWPT 295
+CGF C+ R Q+GYT L +S+ T
Sbjct: 149 ACGFACTLRLRQLRQRGYTPLKDESYLT 176
>11_06_0151 - 20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = +3
Query: 252 PKKVIPLYQQTHGQQLL----RPSPTNIVPNVFTPQ 347
P+K+ ++ +GQ+++ RP PTN+V + P+
Sbjct: 1302 PQKIENIFHHLNGQEMIPQSIRPQPTNLVRPITVPE 1337
>06_02_0169 - 12535102-12536062,12536949-12537646
Length = 552
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 454 SSNSFCKTN*CAINSF*VFMFLLGKLVG 371
S S C+T CA+ S F FLLG VG
Sbjct: 112 SGFSVCRTRRCALASLCFFRFLLGVGVG 139
>06_02_0166 + 12522172-12522890,12523567-12524596
Length = 582
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 454 SSNSFCKTN*CAINSF*VFMFLLGKLVG 371
S S C+T CA+ S F FLLG VG
Sbjct: 119 SGLSVCRTRRCALASLCFFRFLLGVGVG 146
>01_06_1180 + 35168811-35169089,35169224-35169287,35169401-35169570
Length = 170
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 234 QDANGLPKKVIPLYQQTHGQQLLRPSPTNIVPNVF 338
+D G P++V L + H L P PTNI +F
Sbjct: 134 KDTRGEPRQVDKLGRYAHVACLENPKPTNIFAKLF 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,308,953
Number of Sequences: 37544
Number of extensions: 213541
Number of successful extensions: 600
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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