Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304F07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015)                    31   0.76 
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_59101| Best HMM Match : PT (HMM E-Value=0.026)                      28   4.1  
SB_21903| Best HMM Match : DUF21 (HMM E-Value=0)                       28   5.4  
SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               27   7.1  
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_30776| Best HMM Match : HLH (HMM E-Value=1.7e-13)                   27   7.1  
SB_25816| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)              27   9.4  

>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +3

Query: 225 TVHQDANGLPKKVIPLYQQTHGQQLLRPS--PTNIVPNVFTPQPLRQTIPLPTNLP-NRN 395
           T+HQ  N  P +      Q   Q   +P+  PTN   N  T QP  Q    PTN P N+ 
Sbjct: 197 TLHQPTNLPPNQPYKQTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQP 256

Query: 396 INTQNE 413
            N  N+
Sbjct: 257 TNQTNQ 262


>SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015)
          Length = 728

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 328 LTYSHLNH*DKLSH--CQPIYLTET*ILKMNLLHISSFYKRSWKKNKG 465
           L Y H+N   KL++   Q  YLT T    + +L+ S F   SWK ++G
Sbjct: 451 LNYEHMNTYIKLTYYRIQSRYLTVTKFANLLVLYSSGFTHVSWKMHEG 498


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
 Frame = +3

Query: 141  THNEDGENIEDVDKRDVQVYQAPLVAAFTVHQDANGLPKKVIPLYQQTHGQQLLRPSPTN 320
            T  +  E   DV+K +  +      A   +++ +N   ++   +  Q H  Q  +P+P  
Sbjct: 2567 TEKKSQETGPDVNKVENNIKTESCTANEQLNKLSNQQTQQQQVMQTQAHAMQPSQPNPQQ 2626

Query: 321  IVPNVFTPQPLRQTIPLPTNLPNRNI-NTQNEFIAHQFV 434
            +      P       P PT+ P +++ N Q + +  Q V
Sbjct: 2627 LQQQQIHPLSQPNPFPTPTSGPPQSVANNQQQVMQQQLV 2665


>SB_59101| Best HMM Match : PT (HMM E-Value=0.026)
          Length = 386

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +3

Query: 234 QDANGLP--KKVIPLYQQTHGQQLLRPSPTNIVPNVFTPQ---PLRQTIPLP 374
           Q  N  P  + ++  +QQ   + L   +P +  PN FT Q   P+RQ  PLP
Sbjct: 325 QQNNSQPWQQNIVQPWQQMPTRSLSNATPWSPQPNGFTGQLCQPMRQNCPLP 376


>SB_21903| Best HMM Match : DUF21 (HMM E-Value=0)
          Length = 1040

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 400 FMFLLGKLVGNGIVCLSG*GVNTLGTILVGE 308
           F  LL  L+GNGIV + G   +T G ++ GE
Sbjct: 532 FTVLLDSLIGNGIVAVLG---STAGIVIFGE 559


>SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 422 CNKFILSIYVSVR*IGWQWDSLSQWLRCE 336
           C +F+ S+Y S +  G   D +  W+ C+
Sbjct: 524 CERFVCSLYTSAKKAGVTADDVRYWMFCQ 552


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 249 LPKKVIPLYQQT--HGQQLLRPSPTNIVPNVFTPQPLRQTIPLP 374
           LP  +  L Q T  H Q   +P PT + P   TP P RQ+ P P
Sbjct: 607 LPLSIPLLLQATPPHLQSTAQPRPTTVPPLPPTPPP-RQSTPPP 649


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 192  QVYQAPLVAAFTVHQDA-NGLPKKVIPLYQQTHGQQLLRPSPTNIVPNVFTPQ 347
            Q+  A    ++ V  D+ N LPK+ +PL +        +P+ T + P    PQ
Sbjct: 2457 QILAAATRPSYAVSLDSYNDLPKEELPLVETIVFGARSKPAATTVAPTTAVPQ 2509


>SB_30776| Best HMM Match : HLH (HMM E-Value=1.7e-13)
          Length = 1217

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = +3

Query: 189 VQVYQAPLVAAFTVHQDANGLPKKVIP-LYQQTHGQQLLRPSPTNIVPNVFT---PQPLR 356
           VQ    P V   T+ +  N +   ++P  Y  T     LRPSPT  + N FT   P  L 
Sbjct: 686 VQQKTTPSVIQITLRRLENQI--SILPGNYSSTTATVGLRPSPTYCIGNTFTTAQPTALT 743

Query: 357 QTIPLP-TNLPNRNINTQ 407
           +    P  N+   N++T+
Sbjct: 744 RVSLTPIVNVAGGNVSTR 761


>SB_25816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 267 PLYQQTHGQQLLRPSPTNIVPNVFTPQPLRQTIPLPTNL 383
           P  ++ + +++L+P+PT +  N  TP P+ +    P  L
Sbjct: 50  PRTRERNDEKVLKPTPTVVTENFGTPSPVTRDCRKPKYL 88


>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
          Length = 531

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 309 SPTNIVPNVFTPQPLRQTIPLPTNLPNRNINTQNEF 416
           +PT       T  P   T P  T  PN + NT +++
Sbjct: 41  APTTTTAPTTTTAPTTTTAPTTTTTPNNDYNTSDDY 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,177,025
Number of Sequences: 59808
Number of extensions: 246034
Number of successful extensions: 730
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)