Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304F07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026208-2|AAB71269.3|  774|Caenorhabditis elegans Prion-like-(q...    31   0.38 
AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical ...    31   0.66 
Z29561-5|CAA82668.1|  395|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U40421-1|AAA81437.2|  178|Caenorhabditis elegans Helix loop heli...    29   1.5  
AF037063-1|AAC26105.1|  178|Caenorhabditis elegans twist protein.      29   1.5  
AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>AF026208-2|AAB71269.3|  774|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 40
           protein.
          Length = 774

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +3

Query: 201 QAPLVAAFTVHQDANG-LPKKVIPLYQQTHGQQLLRPSPTNIVPNVFTPQPLRQTIPLPT 377
           Q P    F   Q  N   P++V  ++QQT  QQ+ +P   N  P++ + Q  RQ  P P 
Sbjct: 511 QQPQQQQFYNQQQYNAQTPQQVQQVHQQTPQQQVQQPHQPNQQPHIPSQQLPRQQAPQPA 570

Query: 378 -NLPN 389
            N P+
Sbjct: 571 QNRPS 575


>AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical
           protein Y67H2A.10 protein.
          Length = 608

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = +3

Query: 273 YQQTHGQQLLRPSPTNIVPNVFTPQPLRQTIPLPTNLPNRNINTQNE 413
           YQQ H Q    PS          P P R  IPL  +LP  N  TQ +
Sbjct: 512 YQQQHQQSPQFPSYQQSPQQQQAPPPQRSPIPLSQSLPPLNSMTQQQ 558


>Z29561-5|CAA82668.1|  395|Caenorhabditis elegans Hypothetical
           protein R10E12.2 protein.
          Length = 395

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +3

Query: 234 QDANGLPKKVIPLYQQTHGQQLLRPSPTNIVPNVFTPQPLRQTIPLPTNLPNRNINTQN 410
           Q  N  P ++        G Q  RP P ++ P +F PQ   Q    PT    R++ + N
Sbjct: 327 QQQNAHPSEMYHSTYTRDGYQTYRPPPPSVHPPIFPPQ--TQLFHPPTYSTQRHVTSPN 383


>U40421-1|AAA81437.2|  178|Caenorhabditis elegans Helix loop helix
           protein 8 protein.
          Length = 178

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +3

Query: 210 LVAAFTVHQDANGL-----PKKVIPLYQQTHGQQLLRPSPTNIVPNVFTPQPLRQTIPLP 374
           L +AF + +  NG      P ++ PL Q  H   +  P+P++I P+   PQP  QT P P
Sbjct: 95  LQSAFNMWRGNNGYTPIAGPSQLPPL-QSAH---IPPPAPSSIPPHCLMPQPWYQTCPPP 150


>AF037063-1|AAC26105.1|  178|Caenorhabditis elegans twist protein.
          Length = 178

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +3

Query: 210 LVAAFTVHQDANGL-----PKKVIPLYQQTHGQQLLRPSPTNIVPNVFTPQPLRQTIPLP 374
           L +AF + +  NG      P ++ PL Q  H   +  P+P++I P+   PQP  QT P P
Sbjct: 95  LQSAFNMWRGNNGYTPIAGPSQLPPL-QSAH---IPPPAPSSIPPHCLMPQPWYQTCPPP 150


>AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical
           protein Y56A3A.4 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 243 NGLPKKVIP--LYQQTHGQQLLRPSPTNIVPNVFTPQPLRQTIPLPTNLP 386
           N  P  + P  + Q  H QQ  +P P+  +     PQP +Q  P P  +P
Sbjct: 171 NSSPMPLPPQQIMQVQHQQQHQQPPPSQQIQQPPIPQPQQQQAPPPQMIP 220


>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
           protein Y49E10.10 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 306 PSPTNIVPNVFTPQPLRQTIPLPTNLPN 389
           P+P N    V T +P +   P PT +PN
Sbjct: 236 PAPENTTAKVETTKPTKAAPPAPTPVPN 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,037,082
Number of Sequences: 27780
Number of extensions: 195691
Number of successful extensions: 570
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)