Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304F07f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24570.1 68415.m02934 WRKY family transcription factor identi...    29   1.4  
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa...    29   2.5  
At1g74840.1 68414.m08672 myb family transcription factor similar...    28   3.3  
At5g52300.1 68418.m06491 low-temperature-responsive 65 kD protei...    27   5.8  
At3g19290.1 68416.m02446 ABA-responsive element-binding protein ...    27   7.7  
At1g66880.1 68414.m07601 serine/threonine protein kinase family ...    27   7.7  

>At2g24570.1 68415.m02934 WRKY family transcription factor identical
           to WRKY transcription factor 17 GI:15991743 from
           [Arabidopsis thaliana]
          Length = 321

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 255 KKVIPLYQQTHGQQLLRPSPTNIVPNVFTPQPLRQTIPLPTNL 383
           KKVI L  ++ G    R  P +  P+   P P++ T P PT +
Sbjct: 58  KKVISLLNRS-GHARFRRGPVHSPPSSSVPPPVKVTTPAPTQI 99


>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
           family protein contains Pfam profile PF01190: Pollen
           proteins Ole e I family
          Length = 401

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 306 PSPTNIVPNVFTPQPLRQTIPLPTNLPN 389
           P+P N  P++  P PL  +IP PT  PN
Sbjct: 263 PNPLN-PPSIIPPNPLIPSIPTPTLPPN 289


>At1g74840.1 68414.m08672 myb family transcription factor similar to
           myb-related transcription activator GI:9279717 from
           [Arabidopsis thaliana]
          Length = 265

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +3

Query: 207 PLVAAFTVHQDANGLPKKVIPLYQQTHGQQLLRPSPTNIVPNVFTPQPLRQTIPLPTNLP 386
           P +  F++H      P+  +P   Q++G QL   +  N+VP  F   P    + L  +L 
Sbjct: 188 PEINNFSIHPVMQVFPEFPVPTGNQSYG-QLTSSNLINLVPLTFQSSP--APLSLNLSLA 244

Query: 387 NRNIN 401
           + N+N
Sbjct: 245 SSNLN 249


>At5g52300.1 68418.m06491 low-temperature-responsive 65 kD protein
           (LTI65) / desiccation-responsive protein 29B (RD29B)
           nearly identical to SP|Q04980 Low-temperature-induced 65
           kDa protein (Desiccation-responsive protein 29B)
           {Arabidopsis thaliana}
          Length = 619

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 144 HNEDGENIED-VDKRDVQVYQAPLVAAFTVHQDANGLPKKVIPLYQQTHGQQLLRPSPTN 320
           H+ D E+ +D  D++D +V+ AP+  +  V     G PK +      +H  +   P+   
Sbjct: 58  HDHDVEDDDDEYDEQDPEVHGAPVYESSAVRGGVTGKPKSL------SHAGETNVPASEE 111

Query: 321 IVP 329
           IVP
Sbjct: 112 IVP 114


>At3g19290.1 68416.m02446 ABA-responsive element-binding protein 2
           (AREB2) almost identical (one amino acid) to GB:AAF27182
           from (Arabidopsis thaliana); contains Pfam profile
           PF00170:bZIP transcription factor; identical to cDNA
           abscisic acid responsive elements-binding factor (ABRE)
           mRNA, partial cds GI:6739282
          Length = 431

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 276 QQTHGQQLLRPSPTNIVPNVFTPQPLRQTIPLPTNLPNR 392
           QQ   QQL +P P   +P    P+        P N+ N+
Sbjct: 251 QQQQMQQLNQPHPQQRLPQTIFPKQANVAFSAPVNITNK 289


>At1g66880.1 68414.m07601 serine/threonine protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 1296

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 406 KMNLLHISSFYKRSWKKNKGFLRSNCVSCSYS 501
           K+N+ ++ S  ++ ++ N   +   C +CSYS
Sbjct: 359 KLNIANLESVLEKGFEVNMNVIMKACQACSYS 390


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,336,279
Number of Sequences: 28952
Number of extensions: 178139
Number of successful extensions: 487
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)