Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304F06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17615| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_33799| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_56316| Best HMM Match : SMC_C (HMM E-Value=2.4)                     27   7.1  
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_6164| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_17615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 351 RIRSHTFYMKSLTELVTSIH*NRLILQKKKHLQNLFLSLR 470
           R + HT      T+L T I+   LILQK++HL  L+L +R
Sbjct: 39  RSKYHTRERDQQTQLKTQINTFILILQKRQHLGELWLFIR 78


>SB_33799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 132 CKLKWHNINAELGSSECKNKLLHDKQSVFIYKFVYFIIMKI 254
           C+LK  N N +LG  E + ++  D     +YK V F+   +
Sbjct: 44  CELKRSNFNRDLGWREVRVQMWGDISVNLVYKTVVFLARSV 84


>SB_56316| Best HMM Match : SMC_C (HMM E-Value=2.4)
          Length = 1023

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 144 WHNINAELGSSECKNKLLHDKQS 212
           WHNIN E G+   K+  L D +S
Sbjct: 283 WHNINPEYGNDSVKSTHLTDMKS 305


>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
 Frame = +2

Query: 341 LLVPYSVTYILYE-IINRACYKYTLKSVNFTE------KKTFTESILIITPVQAVRYFNE 499
           L++P  +  ILY  +I++  +K + +++  T+      +KT T+ +LI+T +  V + ++
Sbjct: 780 LIIPLLIMTILYGLVIHKLWFKSSTQTIQPTQLAVEKTRKTVTKMLLIVTVIYVVCWSSD 839

Query: 500 L 502
           L
Sbjct: 840 L 840


>SB_6164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 61  KQKNNKDVNKSKIHRLR*KVFTNNVSLNGTI 153
           K KNN  +N +  +  R  +  NN S+N TI
Sbjct: 380 KNKNNSRINNNSSNNNRRNISRNNNSINNTI 410


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,623,030
Number of Sequences: 59808
Number of extensions: 202812
Number of successful extensions: 386
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)