Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304F05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   221   4e-59
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    28   0.97 
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   1.3  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    27   2.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.2  
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    26   3.9  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   6.8  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   6.8  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   9.0  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   9.0  
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   9.0  
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.0  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  221 bits (541), Expect = 4e-59
 Identities = 102/149 (68%), Positives = 124/149 (83%)
 Frame = +2

Query: 74  MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 253
           M LQ+ KPAP FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A 
Sbjct: 1   MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60

Query: 254 EFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETG 433
           +F +   +V+  STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G
Sbjct: 61  KFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAG 120

Query: 434 IPFRGLFIIDDKQNLRQITINDLPVGRSV 520
           + FRGLF+ID K  LRQITINDLPVGRSV
Sbjct: 121 VAFRGLFLIDPKGVLRQITINDLPVGRSV 149


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
 Frame = +2

Query: 2   ISKASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGE--------FKDISLS 157
           +S    S   S F+Y     SF++     T  +P+   TA+            FK    +
Sbjct: 26  LSPIGDSKNTSSFIYLGNPISFHEYNYDETMVSPENVKTAIAGSAKDHETCRGFKKTGTT 85

Query: 158 DYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRK 265
            YK      F +  D+T   PT  +  S+  DEF K
Sbjct: 86  SYKD-----FVFSRDYTNWTPTFWVLLSQLIDEFLK 116


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 337 QAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRP 501
           +A R+  H H +   +   H  R  S   G  HS   +LH   QA+P A   ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 95  PAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 226
           P P F+  +  +G+F   S +  K K V L  YP   TF   TE
Sbjct: 271 PEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/60 (26%), Positives = 33/60 (55%)
 Frame = -3

Query: 285  PSTSQPILRNSSAFSENAMISVGHTNVKSKG*KNSTTYFPL*SDREMSLNSPLTTAVALN 106
            P TS  +L +S+  + + +++   T + S    N  T  P+ S   ++ ++P+T++ ALN
Sbjct: 1247 PITSSSVLNSSTPITSSTVVN-SSTPITSSTALN--TSIPITSSSVLNSSTPITSSTALN 1303


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
 Frame = +2

Query: 77  PLQMTKPAPQ--FKATAVVNGEFKDISLSDYKG-----------KYVVLFFYPLDFTFVC 217
           P+ + KPA      +T  V     DI+L D  G           K +V+F YP   T  C
Sbjct: 30  PVMLKKPAKDESVDSTIQVGDVIPDITLPDEDGTSIRLRDITANKGLVIFAYPKASTPGC 89

Query: 218 PTEIIAFSEKADEFRKIGCEVLGASTDS 301
             +   F +   + +    EVLG S D+
Sbjct: 90  TKQGCGFRDNYPKIQASDYEVLGLSFDT 117


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 50  SKVFSFNKMPLQMTKPAPQFKATAVVN 130
           S +FSFN      TKP+P   +T   N
Sbjct: 467 SSIFSFNAPSAASTKPSPAVSSTFSFN 493


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 344 GGLGPMNIPLISDKS 388
           GGL PM+IP IS +S
Sbjct: 673 GGLAPMSIPAISKRS 687


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 365 IPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQN 475
           IPL +D     S +    DEE     R  FI++D+++
Sbjct: 43  IPLDNDNDENDSSEESATDEEAERQVREGFIVEDEED 79


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 206 TFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFT 310
           TF   T +    E  DEF ++G +VLG   D+  T
Sbjct: 556 TFGGQTALNVGIELKDEFEQLGVKVLGTPIDTIIT 590


>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 238

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 118 RGLELGSGFGHLQRHLVETKD 56
           R L+LG+G GHL   L+E +D
Sbjct: 67  RVLDLGTGNGHLLFRLLEEED 87


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -2

Query: 502 QVVDRDL-PEVLLVVDDEESSEGNARLLVQ 416
           ++ D DL PEV  ++ +EES  G +R L++
Sbjct: 129 EIADNDLEPEVYDILYEEESKLGESRDLIR 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,798,956
Number of Sequences: 5004
Number of extensions: 32898
Number of successful extensions: 96
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)