Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304F05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 97 8e-21
06_01_0671 - 4899611-4899829,4900870-4901448 62 3e-10
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 60 1e-09
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 40 4e-09
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 56 1e-08
02_01_0691 - 5167260-5167937 41 5e-04
01_03_0105 + 12604125-12604583 31 0.42
07_03_0575 - 19637277-19637681 29 1.7
01_01_0288 - 2373764-2373923,2374016-2374398,2375426-2375710 29 1.7
07_03_1139 + 24254662-24255306 29 2.3
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975... 29 3.0
07_01_0478 - 3605306-3605614,3605766-3605906 28 4.0
02_03_0183 + 16106205-16106474 28 4.0
02_02_0154 + 7263707-7263782,7263908-7264248 28 4.0
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866... 24 4.5
11_04_0217 + 14979455-14979781 27 6.9
11_01_0249 - 1913739-1914755 27 9.1
09_06_0046 + 20467240-20467586,20467627-20468116,20468815-20469426 27 9.1
01_07_0192 - 41888998-41890632 27 9.1
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 97.1 bits (231), Expect = 8e-21
Identities = 53/100 (53%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Frame = +2
Query: 5 SKASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGK-YVV 181
+ +S S S FV ++ + PL K AP F A AV + EF ++ LSDY GK YV+
Sbjct: 46 ASSSRSARASSFV--ARAGGVDDAPLVGNK-APDFDAEAVFDQEFINVKLSDYIGKKYVI 102
Query: 182 LFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDS 301
LFFYPLDFTFVCPTEI AFS++ DEF K+ E+LG S DS
Sbjct: 103 LFFYPLDFTFVCPTEITAFSDRYDEFEKLNTEILGVSIDS 142
Score = 84.6 bits (200), Expect = 4e-17
Identities = 39/72 (54%), Positives = 51/72 (70%)
Frame = +2
Query: 305 FTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQ 484
F+HLAW+ T RK GGLG + PLISD + IS+ +GVL + GI RGLFIID + ++
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQH 271
Query: 485 ITINDLPVGRSV 520
TIN+L +GRSV
Sbjct: 272 STINNLAIGRSV 283
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 62.1 bits (144), Expect = 3e-10
Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Frame = +2
Query: 146 ISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWI 325
+SLS +KG+ VV++FYP D T C + AF + ++F+K G EV+G S D +H +
Sbjct: 137 VSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASHKEF- 195
Query: 326 NTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETG-IPFRGLFIIDDKQNLRQITIND 499
+K+ L P L+SD+ +++ +++GV + G +P R +++ DK + Q N+
Sbjct: 196 ---KKKYKL-PFT--LLSDEGNKVRKEWGVPADLFGTLPGRQTYVL-DKNGVVQYIYNN 247
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 60.1 bits (139), Expect = 1e-09
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Frame = +2
Query: 146 ISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAW 322
I + D+ G YV+LF +P DFT VC TE+ A + A EF K G ++LG S D +H W
Sbjct: 57 IRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKDW 116
Query: 323 INTPRKQGGLGPMNIPLISDKSHRISRDYGVLD----EETG--IPFRGLFIIDDKQNLRQ 484
I + P+++D S + ++D + G +P R L I+ + ++
Sbjct: 117 IKDIEAYKPGNRVTYPIMADPSREAIKQLNMVDPDEKDSNGGHLPSRALHIVGPDKKVKL 176
Query: 485 ITINDLPVGRSV 520
+ VGR++
Sbjct: 177 SFLYPACVGRNM 188
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 39.5 bits (88), Expect(2) = 4e-09
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +2
Query: 410 GVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGRSV 520
GV + GI RGLFIID + ++ TIN+L +GRSV
Sbjct: 73 GVSIDSVGIALRGLFIIDKEGVIQHSTINNLAIGRSV 109
Score = 38.3 bits (85), Expect(2) = 4e-09
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +2
Query: 209 FVCPTEIIAFSEKADEFRKIGCEVLGASTDS 301
FV EI AFS++ +EF KI EVLG S DS
Sbjct: 48 FVSSAEITAFSDRYEEFEKINTEVLGVSIDS 78
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 56.4 bits (130), Expect = 1e-08
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +2
Query: 146 ISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAW 322
I L D+ G YV++F +P DFT VC TE+ + A EF K G ++LG S D +H W
Sbjct: 22 IRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKDW 81
Query: 323 INTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEE 427
I + P+++D R ++D +
Sbjct: 82 IKDIEAYKPGRRVGFPIVADPDREAIRQLNMIDAD 116
>02_01_0691 - 5167260-5167937
Length = 225
Score = 41.1 bits (92), Expect = 5e-04
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Frame = +2
Query: 128 NGEFKDISLSDYK-GKYVVLFFYPLDFTFVCPTEII-AFSEKADEFRKIGCEVLGA-STD 298
+GE K +++++ G+ VLF P FT C + + F EKA E G + + S +
Sbjct: 81 DGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVN 140
Query: 299 SHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGV 415
F AW ++ GLG ++ L+SD + ++R GV
Sbjct: 141 DAFVMRAW----KESLGLGDADVLLLSDGNLELTRALGV 175
>01_03_0105 + 12604125-12604583
Length = 152
Score = 31.5 bits (68), Expect = 0.42
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 358 HEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPA 504
H+H Q +P +LR GR DG H RRQ Q + +PA
Sbjct: 63 HQHKLFYSQPSPPRAKLRLVGRIDGRKEEAAHHSRRQPSLQKEAAAKPA 111
>07_03_0575 - 19637277-19637681
Length = 134
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = -3
Query: 384 LSLIRGMFMGPSPPCLRGVLIQARCVKCESVEAPSTSQPILRNSSAFSENAMISVGHT 211
+ + G P C R V + K ESV A + +L N F NA VG T
Sbjct: 49 IKFLSNKLSGHEPTCKRIVAVGTGSSKSESVVAVDKVESMLCNLDRFEANAQHEVGPT 106
>01_01_0288 - 2373764-2373923,2374016-2374398,2375426-2375710
Length = 275
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 335 RKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITI 493
+K+ G G N+P D R ++DY +DE+ +P F I D++ + + +
Sbjct: 65 KKKKGSGAGNLPGAIDAEIREAQDYLAIDEQEPVPENFPFEILDEEGMSVVIL 117
>07_03_1139 + 24254662-24255306
Length = 214
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Frame = +1
Query: 322 DQHAAQAGRTRPHEHSSDKRQVAPHLPRLR---------SAGRGDGHSLPRTLHHRRQAE 474
D A +T P H D PHLP L +AG P HHR ++
Sbjct: 140 DSSALCCPKTPPPAHRPDPATAVPHLPPLGRDPSPSPLPTAGENSTSPTPEREHHRGESP 199
Query: 475 PQADHDQRPA 504
A +RPA
Sbjct: 200 ADAFLARRPA 209
>03_02_0602 +
9759055-9759223,9759305-9759455,9759548-9759593,
9759974-9760033,9760519-9760555,9761268-9761347,
9761413-9761516,9761613-9761673,9762962-9763019,
9763866-9763918,9764357-9765320,9766131-9766185,
9767223-9768786
Length = 1133
Score = 28.7 bits (61), Expect = 3.0
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Frame = -3
Query: 447 PRKGMPVSSSSTP*SREMRCDLSLIRGMFMGPSPPCLRGVLIQARCVKCESVEAPSTSQ- 271
P P +ST S D + RG+ G PP L C++C SV A +
Sbjct: 369 PSAAAPTGFASTDRSGGAGRDRAFARGICFGDPPPALS----PQYCLRCLSVAAKELADG 424
Query: 270 -PILRNSSAFSENAMISVGHTNVKS 199
P R ++ +++ S T+ S
Sbjct: 425 CPAKRRAAVWTDGCFASFADTSALS 449
>07_01_0478 - 3605306-3605614,3605766-3605906
Length = 149
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 418 GRGDGHSLPRTLHHR 462
G DGH LPRTL HR
Sbjct: 4 GGDDGHGLPRTLSHR 18
>02_03_0183 + 16106205-16106474
Length = 89
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 368 PLISDKSHRISRDYGVLDEETGIP 439
PL S HR SR +G L E +G P
Sbjct: 59 PLASSHEHRFSRLHGCLPESSGFP 82
>02_02_0154 + 7263707-7263782,7263908-7264248
Length = 138
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -3
Query: 438 GMPVSSSSTP*SREMRCDLSLIRGMFMGPSPPCLRGVLIQARCVKCESVEAPSTS 274
G+ +S +T S + C LSL + PS CL+ A + C + AP S
Sbjct: 25 GVIATSKATSKSYKAACTLSLATCLPSLPSDKCLKAAFAAATSLLCLTAGAPPPS 79
>09_04_0745 +
19884868-19886000,19886110-19886309,19886422-19886666,
19886880-19887668
Length = 788
Score = 23.8 bits (49), Expect(2) = 4.5
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = +1
Query: 322 DQHAAQAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQ 495
DQH + T SS + + P LPR R S +T+H + +A Q
Sbjct: 203 DQHGRGSTATAASSASSPELRPMPPLPRQFQQTRTSMPSTSQTIHEAGAEDKRAPPPQ 260
Score = 22.6 bits (46), Expect(2) = 4.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 181 AVLLSFGLHVRVPDGDHRVLGEG 249
AVLLS G + DGDH G G
Sbjct: 186 AVLLSPGNSTALYDGDHDQHGRG 208
>11_04_0217 + 14979455-14979781
Length = 108
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 463 VDDEESSEGNARLLVQHSVVAGDAVRLVAYQRNVHGAE 350
+DD+E+ G +L +H VVAG + +R HG +
Sbjct: 67 LDDDENDVGGGHMLCRHGVVAGSDMER-GVKRCSHGVK 103
>11_01_0249 - 1913739-1914755
Length = 338
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +2
Query: 11 ASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFF 190
A+HSP V ++VF +++P + PAP+ T + + D S++D K V L
Sbjct: 106 AAHSPHQLVPFLETQVFIKDRIPDLSSLPAPRLLMTHIPSQSLPD-SVADSSCKVVYLCR 164
Query: 191 YPLD 202
P D
Sbjct: 165 DPKD 168
>09_06_0046 + 20467240-20467586,20467627-20468116,20468815-20469426
Length = 482
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 251 DEFRKIGCEVLGASTDSHFTHLAWINT 331
D + I +++GA+TD+ F L WI T
Sbjct: 272 DNVKAIIKDIMGAATDTSFVTLEWIMT 298
>01_07_0192 - 41888998-41890632
Length = 544
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 352 RPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQA 483
R HE S R P G GDG+ R +H+ A +A
Sbjct: 351 RVHEEVSSSRHADPRRADAGEDGHGDGYDELRRMHYLHAAISEA 394
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,885,875
Number of Sequences: 37544
Number of extensions: 259293
Number of successful extensions: 983
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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