Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304F05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin ...   241   2e-64
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...   206   7e-54
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    56   2e-08
Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein...    28   4.7  
Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein...    28   4.7  
AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical...    27   8.1  
AC006651-2|AAP82649.1|   72|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin
           protein 2 protein.
          Length = 195

 Score =  241 bits (591), Expect = 2e-64
 Identities = 112/143 (78%), Positives = 125/143 (87%)
 Frame = +2

Query: 92  KPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIG 271
           KPAPQFK  AVV+GEF D+SLSDYKGKYVVLFFYPLDFTFVCPTEIIAFS++A+EF+ I 
Sbjct: 8   KPAPQFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKAIN 67

Query: 272 CEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGL 451
             VL ASTDS F+HLAWIN PRK GGLG MNIP+++D +H+ISRDYGVL E+ GI FRGL
Sbjct: 68  TVVLAASTDSVFSHLAWINQPRKHGGLGEMNIPVLADTNHQISRDYGVLKEDEGIAFRGL 127

Query: 452 FIIDDKQNLRQITINDLPVGRSV 520
           FIID  QNLRQITINDLPVGRSV
Sbjct: 128 FIIDPSQNLRQITINDLPVGRSV 150


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score =  206 bits (503), Expect = 7e-54
 Identities = 91/148 (61%), Positives = 117/148 (79%)
 Frame = +2

Query: 77  PLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADE 256
           PL      P FK TAVV+G+FK IS  DYKGK++V+FFYPLDFTFVCPTEIIA+ ++A+E
Sbjct: 32  PLGPKNTVPAFKGTAVVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPTEIIAYGDRANE 91

Query: 257 FRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGI 436
           FR +G EV+  S DSHF+HLAW+NTPRK GGLG M+IPL++D + +I+  +GVLD+E+G+
Sbjct: 92  FRSLGAEVVACSCDSHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLDKESGL 151

Query: 437 PFRGLFIIDDKQNLRQITINDLPVGRSV 520
            +RGLF+ID    +R  T NDLPVGRSV
Sbjct: 152 SYRGLFLIDPSGTVRHTTCNDLPVGRSV 179


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
 Frame = +2

Query: 140 KDISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHL 316
           K+ +L +Y G+ +++LF +P DFT VC TE+    + A EFRK   ++L  S DS  TH 
Sbjct: 18  KNQTLHNYIGEQWLMLFSHPADFTPVCTTELAELVKLAPEFRKRHVQILAISIDSSETHR 77

Query: 317 AW---INTPRKQGGLGP-MNIPLISDKSHRISRDYGVLDEE 427
            W   IN+  +    G  +   +I+D    I  + G++D +
Sbjct: 78  DWAKDINSVAQLSNCGSHLPFEIIADTDRSICTELGMIDPD 118


>Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical
           protein B0285.1 protein.
          Length = 730

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 358 HEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEP 477
           HE  S K++ +  L R      G GHS+  T H R   +P
Sbjct: 625 HEMWSKKQKKSARLGRQAEGSSGSGHSIRATSHPRAPTQP 664


>Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical
           protein F26E4.12 protein.
          Length = 163

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 122 VVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL 283
           V N    D+SLSDYKGK V++         +         E  D ++K G EVL
Sbjct: 9   VKNANGDDVSLSDYKGK-VLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVL 61


>Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical
           protein M106.5 protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +2

Query: 308 THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 487
           T + W+ T +   G+  MN+     + H +  D  + D+ T +   G  I D +  +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225

Query: 488 TINDLPVGRS 517
           TIN++  G++
Sbjct: 226 TINEIYFGKT 235


>Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +2

Query: 308 THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 487
           T + W+ T +   G+  MN+     + H +  D  + D+ T +   G  I D +  +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225

Query: 488 TINDLPVGRS 517
           TIN++  G++
Sbjct: 226 TINEIYFGKT 235


>Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +2

Query: 308 THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 487
           T + W+ T +   G+  MN+     + H +  D  + D+ T +   G  I D +  +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225

Query: 488 TINDLPVGRS 517
           TIN++  G++
Sbjct: 226 TINEIYFGKT 235


>AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical
           protein Y56A3A.21 protein.
          Length = 159

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 38  FVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVV 181
           F +Y   F   +  LQ +      + TA VNG    +S+SD   K+ V
Sbjct: 35  FFHYKTTF-ITEFTLQCSNNPKNIQYTAEVNGRLIPVSISDETAKFQV 81


>AC006651-2|AAP82649.1|   72|Caenorhabditis elegans Hypothetical
           protein H06I04.7 protein.
          Length = 72

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 407 SRGRCGATCRLSEECSWGR 351
           +   C A C+   ECSWGR
Sbjct: 34  NNSNCTAYCKEKPECSWGR 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,354,533
Number of Sequences: 27780
Number of extensions: 199804
Number of successful extensions: 722
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)