Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304F04f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 7e-12
SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0) 33 0.19
SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 31 0.58
SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25) 29 2.3
SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_52316| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=8) 29 3.1
SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06) 28 4.1
SB_21915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56) 27 7.1
SB_11254| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_2894| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 67.3 bits (157), Expect = 7e-12
Identities = 30/65 (46%), Positives = 42/65 (64%)
Frame = +1
Query: 67 EAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKK 246
E +FDEYDYYNFD +++ G+ K R+K+EA +TN F P GH RK++ K N E N+
Sbjct: 2 EPYFDEYDYYNFD--RNVVEGNTRKGRSKREACLNTNRFCPGGHERKVLEKYRNTEKNRA 59
Query: 247 TSNTK 261
+K
Sbjct: 60 AKPSK 64
>SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 79 DEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHS-RKIVTKLMNAEHNKKTSN 255
D+YD Y+FD H G K ++KKEAS++ N GHS RK + + E +K
Sbjct: 5 DKYDDYDFDERLH--EGGARKGKSKKEASQNKN-VSTQGHSERKAAEYIQHGEDKRKEEK 61
Query: 256 TK 261
K
Sbjct: 62 IK 63
>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
Length = 1291
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 257 VFEVFLLCSAFMSFVTIFLEC-PDGSKWLVCSDASFLVRCLP 135
VF V +L S + + L C P S L CS +SFL+ C P
Sbjct: 1181 VFSVIILFITVFSIIILLLPCSPSSSFSLPCSPSSFLLPCSP 1222
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 257 VFEVFLLCSAFMSFVTIFLECPDGSKWLVCSDASFLVRCLP 135
VF + +L + L C S L CS +SFL+ C P
Sbjct: 1191 VFSIIILLLPCSPSSSFSLPCSPSSFLLPCSPSSFLLPCSP 1231
>SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Frame = +1
Query: 94 YNFDHDKHIFT-GHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 264
Y DHD + GH T + EH + GH T EH+ TS +H
Sbjct: 327 YGHDHDTNTLRYGHDHDTNTLRYEQEHDTNTSRYGHDHDTNTLRYGHEHDTNTSRYEH 384
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Frame = +1
Query: 94 YNFDHDKHIFT-GHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 264
Y DHD + GH T + EH + GH T EH+ TS +H
Sbjct: 383 YGHDHDTNTLRYGHDHDTNTLRYEQEHDTNTSRYGHDHDTNTLRYGHEHDTNTSRYEH 440
>SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)
Length = 1486
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = +1
Query: 124 TGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH*MDC*SINNYG*Q 303
T GG++ +A E SG SRK+V K + + K+ S + + YG
Sbjct: 1319 TATGGERTEVADAREKFTILVASGKSRKMVGKALTHDDVKRMSAVE-------VRKYGRG 1371
Query: 304 KDY*VAKRKEDAIADT 351
+ +A R DA+AD+
Sbjct: 1372 YETALASRTSDALADS 1387
>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1360
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 139 KQRTKKEA--SEHTNHFDPSGHSRKIVTKLMNAEHNKKTSN 255
K R K+A S++ H++ H R +V+KL+ HN +N
Sbjct: 490 KDRMHKKAIKSKNQQHWEAFKHQRNLVSKLIKDSHNDYLNN 530
>SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 55 VNMSEAFFDEYDYYNFDHDKHI 120
V+ +AF+ +DYY F HD ++
Sbjct: 508 VSEGKAFYGSFDYYQFPHDSNL 529
>SB_52316| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=8)
Length = 420
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 55 VNMSEAFFDEYDYYNFDHDKHI 120
V+ +AF+ +DYY F HD ++
Sbjct: 66 VSEGKAFYGSFDYYQFPHDSNL 87
>SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +1
Query: 58 NMSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEH 237
+++E F + Y+ Y +D T G+ E + ++ + P SRK TK+ +
Sbjct: 294 DIAEDFRERYEAYGYDQHDFPDTSSSGE-----ETLDDSDEWLPGQQSRKTSTKVASGAK 348
Query: 238 NKKTSNTK 261
+KT K
Sbjct: 349 KRKTDRGK 356
>SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)
Length = 512
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 293 MASRRTIELPNERRTLLRIPEEC 361
+ S RT +PN RTLL+IP C
Sbjct: 461 LVSNRTDLIPNINRTLLKIPNYC 483
>SB_21915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 249 FKHQTLDGLLINKQLWLAEGLLSCQTKGGRYCGYPRSVRVDARL 380
++ Q L G L QLW+ + SC ++ +CG + + L
Sbjct: 54 YRQQLLSGTLT--QLWVVASMRSCTSRYTGFCGVKEEINLQQAL 95
>SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)
Length = 581
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 319 QLNSPSASHSCLLISNPSSVW 257
Q S SASH C +SNP S W
Sbjct: 528 QCVSASASHRCGRVSNPGSNW 548
>SB_11254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 85 YDYYNFDHDKHIFTGHGGKQR 147
YDY + D+D H + GKQR
Sbjct: 17 YDYVDLDNDSHDYETMNGKQR 37
>SB_2894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 85 YDYYNFDHDKHIFTGHGGKQR 147
YDY + D+D H + GKQR
Sbjct: 103 YDYVDLDNDSHDYETMNGKQR 123
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,442,249
Number of Sequences: 59808
Number of extensions: 346150
Number of successful extensions: 884
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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