Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304F03f
(521 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 42 3e-06
AY074761-1|AAL71874.1| 314|Tribolium castaneum ultrabithorax pr... 24 0.94
EU019710-1|ABU25222.1| 475|Tribolium castaneum dopa decarboxyla... 23 1.6
AJ005422-1|CAA06528.1| 287|Tribolium castaneum caudal protein p... 21 5.0
AJ005421-1|CAA06527.1| 249|Tribolium castaneum caudal protein p... 21 5.0
AY695256-1|AAW21973.1| 168|Tribolium castaneum ventral nerve co... 21 6.6
AY043293-1|AAK96033.1| 523|Tribolium castaneum homeodomain tran... 21 6.6
AF187069-1|AAF03889.1| 471|Tribolium castaneum proboscipedia or... 21 6.6
AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia or... 21 6.6
AY362544-1|AAQ63456.1| 268|Tribolium castaneum chitin synthase ... 21 8.7
AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase ... 21 8.7
AY321476-1|AAQ23386.1| 253|Tribolium castaneum Ash protein. 21 8.7
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 21 8.7
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 21 8.7
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 41.9 bits (94), Expect = 3e-06
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +1
Query: 4 PRIVVSYS-TYVDNIGNRVVLPCRVKGHPKPKITWFNGQNVPIEKNPRMKVLRSGELVIS 180
P + S+ T+ V LPC G P P ITW + V + +++ G L I
Sbjct: 1306 PAKIASFDDTFTTTYKEDVTLPCLAVGLPPPVITW-KIKGVQFTTSDKIRQQPDGSLFIR 1364
Query: 181 SLLWSDMDEYTCQAENAFGSE 243
+ ++ EY+C EN +G +
Sbjct: 1365 DVSRNNAGEYSCHVENDYGQD 1385
Score = 39.5 bits (88), Expect = 2e-05
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 46 GNRVVLPCRVKGHPKPKITW-FNGQNVPIEKNPRMKVLRSGELVISSL-LWSDMDEYTCQ 219
G +++ C GHP + W +G+ +PI N + KV +G L+I ++ SD Y C
Sbjct: 525 GGTLIVHCPFAGHPVDSVVWERDGRQLPI--NRKQKVFINGTLIIENVERASDQATYDCV 582
Query: 220 AENAFG 237
A+N+ G
Sbjct: 583 AKNSQG 588
Score = 36.3 bits (80), Expect = 2e-04
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Frame = +1
Query: 46 GNRVVLPCRVKGHPKPKITWFNGQNV-PIE------KNPRMKVLRSGELVISSLLWSDMD 204
G+ + C+ G P+P +TW V P + NP +KV G L I+++ ++
Sbjct: 713 GSDAAVECKADGFPRPVVTWKRATGVSPGDYKDFKPNNPDIKV-EDGTLTINNIQKTNEG 771
Query: 205 EYTCQAENAFGS 240
Y C+A N GS
Sbjct: 772 YYLCEAVNGIGS 783
Score = 35.1 bits (77), Expect = 4e-04
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Frame = +1
Query: 55 VVLPCRVKGHPKPKITWF-----NGQNVPIEKNPRMKVLRSGELVISSLLWSDMDEYTCQ 219
V L C +G P P W+ + + N R+K + +G L+I D +Y C
Sbjct: 250 VALLCPAQGFPSPSFRWYKFVEGTTRKQAVTLNDRVKQV-AGTLIIREAKVEDSGKYLCV 308
Query: 220 AENAFGSEKAKT 255
N+ G E +T
Sbjct: 309 VNNSVGGESVET 320
Score = 32.7 bits (71), Expect = 0.002
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Frame = +1
Query: 58 VLPCRVKGHPKPKITWFNGQNVPIEKNPRMK-VLRSGELVISSLLWSDMDE------YTC 216
V+ C G+P P I W + P ++ VL +G LV D + Y C
Sbjct: 42 VVECSAHGNPTPDIIWVRSDGTAVGDVPGLRQVLANGNLVFPPFRAEDYRQEVHAQVYVC 101
Query: 217 QAENAFGS 240
A+N+ GS
Sbjct: 102 LAKNSVGS 109
Score = 32.3 bits (70), Expect = 0.003
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Frame = +1
Query: 4 PRIVVSYSTYVDNIGNRVVLPCRVKGHPKPKITW-FNGQNVP-IEKNP-RMKVLRSGELV 174
P+I +++ GN V L C G+P P+ITW G+ + E+N V +G++V
Sbjct: 414 PQIRHAFNEETVQPGNSVFLKCIASGNPTPEITWELYGRRLSNSERNQIGQYVTVNGDVV 473
Query: 175 ----ISSLLWSDMDEYTCQAENAFGS 240
I+++ +D Y C A + GS
Sbjct: 474 SHLNITAIHTNDGGLYRCVASSKVGS 499
Score = 30.3 bits (65), Expect = 0.011
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Frame = +1
Query: 4 PRIVVSYSTYVDNIGNRVVLPCRVKGHPKPKITWFNGQNVPIEKNP------RMKVLRSG 165
P+ + G+ VL C KG I W N N +E R ++L +G
Sbjct: 797 PQFDIKLRNQTSRRGDPAVLQCEAKGEKPIGILW-NINNKRLEPKGDNRYTIREEILANG 855
Query: 166 ELV---ISSLLWSDMDEYTCQAENAFGSE 243
L I SD +TC A NAFGS+
Sbjct: 856 VLSGLSIKRTERSDSALFTCVATNAFGSD 884
>AY074761-1|AAL71874.1| 314|Tribolium castaneum ultrabithorax
protein.
Length = 314
Score = 23.8 bits (49), Expect = 0.94
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Frame = +1
Query: 307 QTRHVYLIWMFLLDKFVFDKAQCTRRMRNAAFS*K----KKRFYKQYYL 441
QT H + WM + D F RR R + +K F+ +YL
Sbjct: 200 QTNHTFYPWMAIADSMTFGANGLRRRGRQTYTRYQTLELEKEFHTNHYL 248
>EU019710-1|ABU25222.1| 475|Tribolium castaneum dopa
decarboxylase protein.
Length = 475
Score = 23.0 bits (47), Expect = 1.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 25 STYVDNIGNRVVLPCRVKGHPKPKI 99
S Y++NI +R VLP G+ +P I
Sbjct: 18 SGYLENIRDRRVLPTVEPGYLRPLI 42
>AJ005422-1|CAA06528.1| 287|Tribolium castaneum caudal protein
protein.
Length = 287
Score = 21.4 bits (43), Expect = 5.0
Identities = 9/30 (30%), Positives = 13/30 (43%)
Frame = +3
Query: 144 HEGASLGRVGHILPPLERHGRVHLPSRKRF 233
H+GA +G + P H H+P F
Sbjct: 33 HQGAQMGPEQQMWEPQMWHHHSHMPPHSVF 62
>AJ005421-1|CAA06527.1| 249|Tribolium castaneum caudal protein
protein.
Length = 249
Score = 21.4 bits (43), Expect = 5.0
Identities = 9/30 (30%), Positives = 13/30 (43%)
Frame = +3
Query: 144 HEGASLGRVGHILPPLERHGRVHLPSRKRF 233
H+GA +G + P H H+P F
Sbjct: 33 HQGAQMGPEQQMWEPQMWHHHSHMPPHSVF 62
>AY695256-1|AAW21973.1| 168|Tribolium castaneum ventral nerve cord
defective protein protein.
Length = 168
Score = 21.0 bits (42), Expect = 6.6
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +3
Query: 27 HLRGQHRQQGGAPVP 71
H +G H QQ P+P
Sbjct: 100 HEKGMHDQQNNNPLP 114
>AY043293-1|AAK96033.1| 523|Tribolium castaneum homeodomain
transcription factor Maxillopediaprotein.
Length = 523
Score = 21.0 bits (42), Expect = 6.6
Identities = 6/23 (26%), Positives = 13/23 (56%)
Frame = +3
Query: 156 SLGRVGHILPPLERHGRVHLPSR 224
++ V + +PP G +H P++
Sbjct: 265 TIQNVSNTIPPFASRGSMHFPNQ 287
>AF187069-1|AAF03889.1| 471|Tribolium castaneum proboscipedia
ortholog protein.
Length = 471
Score = 21.0 bits (42), Expect = 6.6
Identities = 6/23 (26%), Positives = 13/23 (56%)
Frame = +3
Query: 156 SLGRVGHILPPLERHGRVHLPSR 224
++ V + +PP G +H P++
Sbjct: 213 TIQNVSNTIPPFASRGSMHFPNQ 235
>AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia
ortholog protein.
Length = 477
Score = 21.0 bits (42), Expect = 6.6
Identities = 6/23 (26%), Positives = 13/23 (56%)
Frame = +3
Query: 156 SLGRVGHILPPLERHGRVHLPSR 224
++ V + +PP G +H P++
Sbjct: 396 TIQNVSNTIPPFASRGSMHFPNQ 418
>AY362544-1|AAQ63456.1| 268|Tribolium castaneum chitin synthase
protein.
Length = 268
Score = 20.6 bits (41), Expect = 8.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 520 ISFKKKNSTLGAS 482
+ + KKN TLGA+
Sbjct: 175 VDYMKKNKTLGAA 187
>AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase
protein.
Length = 677
Score = 20.6 bits (41), Expect = 8.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 520 ISFKKKNSTLGAS 482
+ + KKN TLGA+
Sbjct: 489 VDYMKKNKTLGAA 501
>AY321476-1|AAQ23386.1| 253|Tribolium castaneum Ash protein.
Length = 253
Score = 20.6 bits (41), Expect = 8.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 50 TGWCSRAASRDTPSPRSPGS 109
T CS A+S TPS S S
Sbjct: 193 TPTCSEASSSPTPSHSSESS 212
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 20.6 bits (41), Expect = 8.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 520 ISFKKKNSTLGAS 482
+ + KKN TLGA+
Sbjct: 722 VDYMKKNKTLGAA 734
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
CHS2 protein.
Length = 1464
Score = 20.6 bits (41), Expect = 8.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 520 ISFKKKNSTLGAS 482
+ + KKN TLGA+
Sbjct: 722 VDYMKKNKTLGAA 734
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,921
Number of Sequences: 336
Number of extensions: 2528
Number of successful extensions: 21
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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