Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304F03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    28   0.97 
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    27   1.7  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   5.2  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    25   9.0  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   9.0  

>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +2

Query: 68  AASRDTPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSARRR 247
           A S D+P  +SPGS D+     R    R    +S   PP+  +T T  L++    +A   
Sbjct: 203 AKSDDSPVVKSPGSNDKPSASPRISV-RSLGNSSVVRPPTRTST-TRPLSRVNVTNASGS 260

Query: 248 LKHSST 265
           +  +ST
Sbjct: 261 ISKNST 266


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 319 VYLIWMFLLDKFVFDKAQCTRRMRNA 396
           VYLIW+   D FV  K +  R +RNA
Sbjct: 63  VYLIWLIYDDGFVTGKDRQKRWLRNA 88


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 179 PPSSGATWTSTLAKPKTLSARRRLKHSSTPLN 274
           P  S   W +TL KP+++    R    S+P+N
Sbjct: 885 PHWSEHIWLTTLKKPQSIHVSGRFPQVSSPVN 916


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 201 HVAPEEGGYDQLARAKHLHARVLF 130
           H  P E      ARA +LH R++F
Sbjct: 333 HAKPVEDATSTSARASNLHLRIVF 356


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 164 ASWSYPPSSGATWTSTLAKPKTLSARRRLKHSSTPLNPS 280
           A +  PPSSG+    T A P   +        +T LNPS
Sbjct: 279 ADYLQPPSSGSLGAFTNASPGESNTGIDFDTDNTNLNPS 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,921
Number of Sequences: 5004
Number of extensions: 41636
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)