Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304F03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0258 + 27950196-27950749,27953670-27954570 31 0.74
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 29 1.7
09_02_0001 - 2857651-2857923,2858089-2858283 29 2.3
06_03_0188 - 17691582-17692241 29 2.3
02_03_0411 - 18739279-18739902,18741471-18741671 29 3.0
07_01_0956 + 8029297-8030285,8033204-8033330,8033350-8033640 28 4.0
01_06_1740 - 39575614-39576981 28 4.0
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031... 28 5.2
08_01_0821 + 7966587-7966832 28 5.2
06_03_0416 + 20568087-20568702,20568767-20570313 28 5.2
05_01_0062 + 440239-440325,441107-441183,441416-441643,441953-44... 28 5.2
06_01_0338 - 2436779-2436954,2437257-2437484,2438526-2438682 27 6.9
10_08_0100 + 14788426-14789097 27 9.1
07_01_0355 + 2597592-2598280,2599150-2599426 27 9.1
03_06_0199 + 32310272-32311432 27 9.1
01_07_0192 - 41888998-41890632 27 9.1
01_06_0957 - 33352904-33353212,33353316-33353465,33353544-333536... 27 9.1
>01_06_0258 + 27950196-27950749,27953670-27954570
Length = 484
Score = 30.7 bits (66), Expect = 0.74
Identities = 24/73 (32%), Positives = 33/73 (45%)
Frame = +2
Query: 59 CSRAASRDTPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSA 238
C RAA+ + SPR+ S P R R +W+ P S AT +L P +L+A
Sbjct: 115 CHRAAAAASASPRNASSLPAPAPASPRRTFRPDKSRTWAPIPCSSATCRESL--PFSLAA 172
Query: 239 RRRLKHSSTPLNP 277
+TP NP
Sbjct: 173 ------CATPANP 179
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/68 (29%), Positives = 29/68 (42%)
Frame = -2
Query: 349 YLTGTSILSIHDAFGSSSFFLSSTRV*RGRRMF*PSPSRKRFRLGKCTRPCRSRGGRI*P 170
+L G +L++H + +SSF S V R +F PSP P + P
Sbjct: 53 FLFGEDLLAMHHSAAASSFDRSQPEVQVFRDVFSPSPPLLHVAETSSLLPTAAAAAPAPP 112
Query: 169 TRPSEAPS 146
P+ APS
Sbjct: 113 PPPAPAPS 120
>09_02_0001 - 2857651-2857923,2858089-2858283
Length = 155
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 47 ATGWCSRAASRDTPSPRSPGSTDRMCP 127
ATGWCS + P R PG+ +R P
Sbjct: 98 ATGWCSASRRSLLPVVRHPGTIERPLP 124
>06_03_0188 - 17691582-17692241
Length = 219
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 29 PTWTTSATGWCSRAASRDTPSPRSPGSTDRMCPLK 133
P WTT+ T A+ R+T P P + + PL+
Sbjct: 35 PPWTTTTTTMAVPASPRETAFPTKPSNANVSSPLR 69
>02_03_0411 - 18739279-18739902,18741471-18741671
Length = 274
Score = 28.7 bits (61), Expect = 3.0
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 65 RAASRDTPSP--RSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSA 238
R++S +PSP RS S+ R C R R A A+ S SSG T S++ +A
Sbjct: 87 RSSSAYSPSPASRSASSSSRRCSRARGRGGGGGAAAAASTTTSSGYTSVSSVGAVTAAAA 146
Query: 239 RRRLKHSS 262
R SS
Sbjct: 147 AWRSHDSS 154
>07_01_0956 + 8029297-8030285,8033204-8033330,8033350-8033640
Length = 468
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +2
Query: 77 RDTPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSARRRLKH 256
R T S R +D+ C R +R + +S + T+++A P + SAR R H
Sbjct: 216 RRTHSSRVVPGSDKPCVTSRP------SRFDYIGSSASSISMTASIASPSSSSARPRAPH 269
Query: 257 SSTP 268
S+ P
Sbjct: 270 STAP 273
>01_06_1740 - 39575614-39576981
Length = 455
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 124 PIEKNPRMKVLRSGELVISSLLWSDMDEYTCQAENAFG 237
P+ + PR VLRS LV+S + + D Y Q + G
Sbjct: 369 PLHEGPRGSVLRSVHLVVSEVTMTQEDVYEWQNATSKG 406
>12_02_1069 +
25801309-25801433,25802429-25802620,25803130-25803159,
25803426-25803500,25803599-25804373,25804549-25804614,
25804746-25804811,25804898-25805140,25805407-25805502
Length = 555
Score = 27.9 bits (59), Expect = 5.2
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +2
Query: 53 GWCSRAASRD-----TPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLA 217
GW R S+ TPS S ++ CP+K+T+ FA A+ S S+ +T L+
Sbjct: 32 GWMIRCFSKRVGIQFTPSAASAAASASSCPVKKTQCPCSFAVAT-SISSSTCTHFTPQLS 90
Query: 218 KPKTLSARRRLK 253
LS++ + K
Sbjct: 91 SAHLLSSQLKEK 102
>08_01_0821 + 7966587-7966832
Length = 81
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 47 ATGWCSRAASRDTPSPRSPGSTDR 118
A GWC R+T S ++PG+ R
Sbjct: 10 AMGWCGAEEERETASRKAPGACPR 33
>06_03_0416 + 20568087-20568702,20568767-20570313
Length = 720
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = +1
Query: 91 PKITWFNGQNVPIEKNPRMKVLRSGELVI----SSLLWS 195
P+I WF ++ P+ +N ++ G+LV+ +L+WS
Sbjct: 90 PEIVWFANRDHPVGENATVQFTELGDLVLYDADGTLVWS 128
>05_01_0062 +
440239-440325,441107-441183,441416-441643,441953-442176,
442250-442398,443102-443279,443348-443428,443523-443669,
443759-444483
Length = 631
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 138 VLFNGHILSVEPGDLGLGVSLDAAREHHPV 49
+ NG+ V+ GDLGL LD AR H +
Sbjct: 175 IFVNGNQGEVKIGDLGLATILDNARSAHSI 204
>06_01_0338 - 2436779-2436954,2437257-2437484,2438526-2438682
Length = 186
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/56 (32%), Positives = 23/56 (41%)
Frame = +2
Query: 89 SPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSARRRLKH 256
SP P S+ R C +R R S PP++ A TS P + LKH
Sbjct: 22 SPSPPASSIRFCR-GGSRGGRAVVSLRASVPPAAAAATTSGSIAPAISLTEKALKH 76
>10_08_0100 + 14788426-14789097
Length = 223
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 247 PSPSRKRFRLGK--CTRPCRSRGGRI*PTRPSEA 152
PSP+ R + CT C++R R PTRPS +
Sbjct: 183 PSPASPRLPMCSYTCTVDCQTRNVRSAPTRPSSS 216
>07_01_0355 + 2597592-2598280,2599150-2599426
Length = 321
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +2
Query: 35 WTTSATGWCSRAASRDTPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTL 214
W T+ G CS+A P PG+T + R+ A SW ++ AT +
Sbjct: 53 WATTVAGSCSKAGPAAPKLPLLPGNTPTL------RSPSAAAGCSWGLATAAAATGPKST 106
Query: 215 A 217
A
Sbjct: 107 A 107
>03_06_0199 + 32310272-32311432
Length = 386
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -2
Query: 319 HDAFGSSSFFLSSTRV*RGRRMF*PSPSRKRFRLGKCTRPCRSR 188
HDA ++ R RR P P+R+R R G RP + R
Sbjct: 105 HDALRGAAALRGRVRCPCHRRFAHPRPARRRLRQGLLRRPRQRR 148
>01_07_0192 - 41888998-41890632
Length = 544
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -3
Query: 180 GYDQLARAKHLHARVLFNGHILSVEPGDLGLGVSLDAAREHHPVADVVHVGAIGDHDA 7
GYD+L R +LHA + + P D + V+ DA P V G D+ A
Sbjct: 377 GYDELRRMHYLHAAISEAMRLYPPVPIDSRVAVAADAL----PDGTAVRAGWFADYSA 430
>01_06_0957 -
33352904-33353212,33353316-33353465,33353544-33353684,
33354116-33354709
Length = 397
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 146 MRGFFSMGTFCPLNQVILGLGCPLTRHGSTTLLPML 39
M G F +G LN V+L +G P STT+ +L
Sbjct: 271 MSGLFGIGGGLLLNPVLLQIGVPPKTASSTTMFMVL 306
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,962,919
Number of Sequences: 37544
Number of extensions: 298879
Number of successful extensions: 990
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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