Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304F01f
(310 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical p... 30 0.29
Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical pr... 29 0.50
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ... 28 1.2
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 27 2.0
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 27 2.0
Z99942-1|CAB17068.2| 454|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z46791-2|CAA86756.1| 283|Caenorhabditis elegans Hypothetical pr... 27 2.7
U67953-4|AAL13329.1| 732|Caenorhabditis elegans Hypothetical pr... 27 3.5
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 27 3.5
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 26 4.7
AF192746-1|AAF08804.1| 401|Caenorhabditis elegans synapsin prot... 26 4.7
AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain pro... 26 4.7
AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain pro... 26 4.7
AC006743-3|AAF60504.2| 401|Caenorhabditis elegans Synapsin prot... 26 4.7
AC006743-2|AAM97971.1| 474|Caenorhabditis elegans Synapsin prot... 26 4.7
Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical pr... 26 6.2
Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical pr... 26 6.2
Z75549-4|CAA99919.2| 304|Caenorhabditis elegans Hypothetical pr... 26 6.2
Z22178-2|CAA80154.1| 261|Caenorhabditis elegans Hypothetical pr... 26 6.2
U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical pr... 26 6.2
L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting... 26 6.2
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting... 26 6.2
L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting... 26 6.2
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 26 6.2
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 26 6.2
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 26 6.2
AL110500-7|CAB54490.1| 489|Caenorhabditis elegans Hypothetical ... 26 6.2
AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B ... 26 6.2
AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical ... 26 6.2
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 25 8.1
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 25 8.1
Z73105-2|CAA97439.2| 803|Caenorhabditis elegans Hypothetical pr... 25 8.1
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 25 8.1
AF047661-4|AAC04435.2| 931|Caenorhabditis elegans Hypothetical ... 25 8.1
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 25 8.1
AF002196-3|AAP68957.1| 916|Caenorhabditis elegans Hypothetical ... 25 8.1
AF002196-1|AAP68955.1| 913|Caenorhabditis elegans Hypothetical ... 25 8.1
AC084153-16|AAK84590.1| 233|Caenorhabditis elegans Hypothetical... 25 8.1
AC024744-1|AAL00859.1| 685|Caenorhabditis elegans Hypothetical ... 25 8.1
>Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical
protein K10C8.3b protein.
Length = 141
Score = 30.3 bits (65), Expect = 0.29
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = -1
Query: 283 RAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHH 107
R S+ ++ + +RP + R ++ P P R RS + + K + V P+H
Sbjct: 17 RKKSKSVKRCSSCKRPNSTRRSKTPDPNSEKEKVRNRSGSSSKKEKKNSLVNPNLQPNH 75
>Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical
protein C01F6.5 protein.
Length = 223
Score = 29.5 bits (63), Expect = 0.50
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -2
Query: 270 GTSGPPQRPGAQAQRETLGVRS 205
GT+GP +RP AQ +R++ G+R+
Sbjct: 38 GTAGPSRRPTAQPRRQSGGIRT 59
>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
protein Y47D3B.7 protein.
Length = 1113
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 266 HQDHHRGPAPRHSEKHSASEA-DRAERLLPGALRDAPSPE*TFSTCLVSTESTPFP 102
+ HH+ P P H H + + E++ ++ DAP T T LV +S P
Sbjct: 220 YSQHHQSPPPHHHHHHPMPKIHENPEQVASPSIEDAPE---TKPTHLVEPQSPKSP 272
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -1
Query: 295 PGGCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPS 140
P RA SR ARR + ++ P P A R +S R R PS
Sbjct: 329 PAPKRAKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPS 380
Score = 26.6 bits (56), Expect = 3.5
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = -1
Query: 298 PPGGCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRR 119
PP RA SR RR +A + P P + + RS P+ P+R RR
Sbjct: 358 PPAPKRAKSRSKSPPARRRRSPSASKSP-PAPRRRRSPSKSRSPAPKREIPPAR---RRR 413
Query: 118 SP 113
SP
Sbjct: 414 SP 415
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 254 HRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 150
H GP E+H +E D E LL G L D P +
Sbjct: 258 HSGPVAMKMEEHEETEEDFLE-LLNGTLDDVPDSD 291
>Z99942-1|CAB17068.2| 454|Caenorhabditis elegans Hypothetical
protein H13N06.2 protein.
Length = 454
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = -1
Query: 307 PVTPPGGCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVW 128
P PP A S + +++E +A+NT P TE +ET KP + V
Sbjct: 104 PPAPPPQSSAESSGLPSSSEQEEEASAQNTTVPSSTE-ELMTLGVTETNMKTEKPDKGVL 162
Query: 127 SRRSP 113
SP
Sbjct: 163 KILSP 167
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 259 TTTEARRPGTARNTRRPKPTELSACCRERSETP 161
TTT +RP T T P+P E +E++E P
Sbjct: 163 TTTTTKRPPTTTTTEDPQPFEFHE-LQEQAENP 194
>Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical
protein F52B5.6 protein.
Length = 146
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 277 VSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSET 164
V +++RT+ RRP T R P+ SA R++ ++
Sbjct: 26 VRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDS 63
>Z46791-2|CAA86756.1| 283|Caenorhabditis elegans Hypothetical
protein C09G5.3 protein.
Length = 283
Score = 27.1 bits (57), Expect = 2.7
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -2
Query: 303 SPLRAGAEP*AGTSGPPQRPGAQAQ--RETLGVRSRQS*ALAAGSAQRRPVTGINLLDLF 130
+P ++GA G GPP PG Q R+ +G + A G+ RR G + D
Sbjct: 173 TPGKSGAPGGKGPQGPPGTPGRPGQPGRKAIGEAGPKGPPGAPGTDGRRGENGTDGDD-- 230
Query: 129 GLDG 118
G+DG
Sbjct: 231 GVDG 234
>U67953-4|AAL13329.1| 732|Caenorhabditis elegans Hypothetical
protein ZC13.3 protein.
Length = 732
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 241 RPGTARNTRRPKPTEL 194
RP T + T++PKPTE+
Sbjct: 189 RPWTVKQTKKPKPTEV 204
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 297 LRAGAEP*AGTSGPPQRPGAQAQ 229
L G + G SGPP RPGA Q
Sbjct: 202 LLPGGDAPPGPSGPPGRPGAPGQ 224
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -3
Query: 290 RVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAP 159
+ QSR + H HR P E++ A + + L P R P
Sbjct: 1497 KAQSRHRTHDRSHRHHVPSGVERYMAKRSPSVDILKPPMSRRTP 1540
>AF192746-1|AAF08804.1| 401|Caenorhabditis elegans synapsin
protein.
Length = 401
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 305 GHPSGRVQSREQGHQDHHRGP--APRHSEKHSASEAD 201
GH S +V+SR H+DH+ P PR + S S D
Sbjct: 352 GHMSDKVESR---HKDHYDPPPQIPRTGSRESVSYVD 385
>AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform b
protein.
Length = 792
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 280 AVSRDIRTTTEARRPGTARNTRRPKPTELSA 188
+ S + T++ ARRP TA+ PT +A
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAA 202
>AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform a
protein.
Length = 794
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 280 AVSRDIRTTTEARRPGTARNTRRPKPTELSA 188
+ S + T++ ARRP TA+ PT +A
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAA 202
>AC006743-3|AAF60504.2| 401|Caenorhabditis elegans Synapsin protein
1, isoform a protein.
Length = 401
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 305 GHPSGRVQSREQGHQDHHRGP--APRHSEKHSASEAD 201
GH S +V+SR H+DH+ P PR + S S D
Sbjct: 352 GHMSDKVESR---HKDHYDPPPQIPRTGSRESVSYVD 385
>AC006743-2|AAM97971.1| 474|Caenorhabditis elegans Synapsin protein
1, isoform b protein.
Length = 474
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 305 GHPSGRVQSREQGHQDHHRGP--APRHSEKHSASEAD 201
GH S +V+SR H+DH+ P PR + S S D
Sbjct: 425 GHMSDKVESR---HKDHYDPPPQIPRTGSRESVSYVD 458
>Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical
protein R11G10.1b protein.
Length = 478
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 266 HQDHHRGPAPRHSEKHSASEADRAE 192
H H R + HS KH+AS +D E
Sbjct: 19 HAYHSRPKSEEHSPKHAASSSDLFE 43
>Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical
protein T09E8.1d protein.
Length = 547
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = -3
Query: 284 QSREQGHQDHHRGPAPRH-SEKHSASE 207
Q+ H HH PAPRH S H E
Sbjct: 31 QNGNSHHHHHHLPPAPRHLSSSHHQIE 57
>Z75549-4|CAA99919.2| 304|Caenorhabditis elegans Hypothetical
protein T19C4.4 protein.
Length = 304
Score = 25.8 bits (54), Expect = 6.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 31 LRLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAP 180
+R++ +T L+Q + S+ +YYN N +V S DG SL P
Sbjct: 218 IRIAFITCLVQACGTALSVIRYYNMNTSMAVTLANFIPFIS-DGLSLVQP 266
>Z22178-2|CAA80154.1| 261|Caenorhabditis elegans Hypothetical
protein F54C8.2 protein.
Length = 261
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 124 ETKQVEKVYSGDGASLSAPGSKRSALSASDAECF-SLCL 237
E + V DG+SL + SKR+ L+ +D + + LCL
Sbjct: 220 EASEALLVQMFDGSSLISAHSKRATLTTTDVQLYRRLCL 258
>U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical
protein K05F1.5 protein.
Length = 472
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 187 CCRERSETPRHRNKPSRPVWSRRSPHHFHCSI 92
CC S P+ + SRP + HFHC I
Sbjct: 97 CCPITS-LPKRLDSCSRPFCKLKKKAHFHCKI 127
>L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting
protein protein8, isoform a protein.
Length = 1132
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 292 GGCRAVSRDIRTTTEARRPGTARNTRRPKPT 200
GG V+ ++ ARR G ARN ++P T
Sbjct: 508 GGDALVNTPTTSSAAARRSGLARNAKKPVRT 538
>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
protein protein8, isoform b protein.
Length = 1780
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 292 GGCRAVSRDIRTTTEARRPGTARNTRRPKPT 200
GG V+ ++ ARR G ARN ++P T
Sbjct: 508 GGDALVNTPTTSSAAARRSGLARNAKKPVRT 538
>L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting
protein protein8, isoform c protein.
Length = 1697
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 292 GGCRAVSRDIRTTTEARRPGTARNTRRPKPT 200
GG V+ ++ ARR G ARN ++P T
Sbjct: 508 GGDALVNTPTTSSAAARRSGLARNAKKPVRT 538
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 25.8 bits (54), Expect = 6.2
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = -1
Query: 307 PVTPPGGCRAVSRD------IRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNK 146
P+ PP R++SRD I+ RR + +T P+PT + + ETP
Sbjct: 2347 PIAPPRKGRSLSRDAERLLEIQPRAPPRRSRQSGDTLSPEPTPVLTLVKS-DETP----A 2401
Query: 145 PSRPVWSR 122
P RP SR
Sbjct: 2402 PVRPPRSR 2409
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 25.8 bits (54), Expect = 6.2
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = -1
Query: 307 PVTPPGGCRAVSRD------IRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNK 146
P+ PP R++SRD I+ RR + +T P+PT + + ETP
Sbjct: 2347 PIAPPRKGRSLSRDAERLLEIQPRAPPRRSRQSGDTLSPEPTPVLTLVKS-DETP----A 2401
Query: 145 PSRPVWSR 122
P RP SR
Sbjct: 2402 PVRPPRSR 2409
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 25.8 bits (54), Expect = 6.2
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = -1
Query: 307 PVTPPGGCRAVSRD------IRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNK 146
P+ PP R++SRD I+ RR + +T P+PT + + ETP
Sbjct: 2347 PIAPPRKGRSLSRDAERLLEIQPRAPPRRSRQSGDTLSPEPTPVLTLVKS-DETP----A 2401
Query: 145 PSRPVWSR 122
P RP SR
Sbjct: 2402 PVRPPRSR 2409
>AL110500-7|CAB54490.1| 489|Caenorhabditis elegans Hypothetical
protein Y87G2A.7 protein.
Length = 489
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 31 LRLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPG 183
++LS+ L QQ+ S+ + Y ++ V KQ+ ++ GA PG
Sbjct: 419 IKLSEQLYLDQQIKLICSLCQLYPVKMINKVAIKQLLELVVFAGADFEMPG 469
>AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B
protein protein.
Length = 478
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 266 HQDHHRGPAPRHSEKHSASEADRAE 192
H H R + HS KH+AS +D E
Sbjct: 19 HAYHSRPKSEEHSPKHAASSSDLFE 43
>AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical
protein F52F10.4 protein.
Length = 692
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 67 IVVLTSSSWRDVIKP 23
I+ TS++W+DVIKP
Sbjct: 15 IIPTTSATWKDVIKP 29
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 291 AGAEP*AGTSGPPQRPGAQAQRETL 217
+GA G +G P +PGA AQ E++
Sbjct: 194 SGAPGNPGQAGAPGQPGADAQSESI 218
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
protein F54F3.1 protein.
Length = 1584
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 284 QSREQGHQDHHRGPAPRHSEKHS 216
Q++EQ HQ HH+ P+ + S
Sbjct: 328 QAQEQHHQQHHQPDQPQQQPQRS 350
>Z73105-2|CAA97439.2| 803|Caenorhabditis elegans Hypothetical
protein R13.4 protein.
Length = 803
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -2
Query: 300 PLRAGAEP*AGT-SGPPQRPGAQ 235
PL AGA G +GPPQ PG Q
Sbjct: 189 PLGAGAASFPGQMNGPPQHPGMQ 211
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 291 AGAEP*AGTSGPPQRPGAQAQRETLG 214
AGAE AG +GPP PG + G
Sbjct: 167 AGAEGPAGEAGPPGPPGPDGKPGAAG 192
>AF047661-4|AAC04435.2| 931|Caenorhabditis elegans Hypothetical
protein M70.1 protein.
Length = 931
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 224 KHSASEADRAERLLPGALRD 165
KHSASEA R E+L+ + D
Sbjct: 376 KHSASEAARLEKLIENSRND 395
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -2
Query: 273 AGTSGPPQRPGAQAQRETLGVRSRQS*ALAAGSAQRRP 160
AG GPP +PGA+ + G+ + A RP
Sbjct: 91 AGPPGPPGQPGARGEAGLPGIAGQPGSGARINPATGRP 128
>AF002196-3|AAP68957.1| 916|Caenorhabditis elegans Hypothetical
protein C09D4.4c protein.
Length = 916
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 61 QQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDG 162
+ L+CS S+S+ +G TK +++ S DG
Sbjct: 423 KSLDCSQSLSRKLDGGVTSRSRTKTLKETTSTDG 456
>AF002196-1|AAP68955.1| 913|Caenorhabditis elegans Hypothetical
protein C09D4.4a protein.
Length = 913
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 61 QQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDG 162
+ L+CS S+S+ +G TK +++ S DG
Sbjct: 420 KSLDCSQSLSRKLDGGVTSRSRTKTLKETTSTDG 453
>AC084153-16|AAK84590.1| 233|Caenorhabditis elegans Hypothetical
protein Y22D7AL.16 protein.
Length = 233
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 283 RAVSRDIRTTTEARRPGTAR--NTRRPKPTELSACCRERSETPR 158
R +D + ++ R + R N ++P+P + R+RS TP+
Sbjct: 8 RRTKKDYKKRSKQNRERSRRYSNCKKPQPLNKPSPVRDRSRTPK 51
>AC024744-1|AAL00859.1| 685|Caenorhabditis elegans Hypothetical
protein Y108G3AL.3 protein.
Length = 685
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -1
Query: 220 TRRPKPTELSACCRERSETPRHRNKPSRPVWSRRS 116
TR P R++TP +NK RP R S
Sbjct: 496 TRPPSRKAAGGSHEPRAKTPNQKNKDERPTTRRSS 530
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,647,526
Number of Sequences: 27780
Number of extensions: 158403
Number of successful extensions: 988
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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