Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304F01f
         (310 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   3.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   5.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   5.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   7.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   7.8  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 307 PVTPPGGCRAVSRDIR 260
           PVTPP G   +  D+R
Sbjct: 46  PVTPPQGENMLDMDLR 61


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +1

Query: 94  YYNGNGVDSVETK 132
           Y NG+G++S++ +
Sbjct: 824 YVNGSGIESIQNR 836


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -3

Query: 269 GHQDHHRGPAPRHSEKHSAS 210
           GH   H    P H   H+A+
Sbjct: 420 GHGHSHIHATPHHHHSHAAT 439


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 308 AGHPSGRVQSREQGHQDHHR 249
           A  P+G V +   G+ D+HR
Sbjct: 338 ANVPNGSVTNWVSGNHDNHR 357


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 298 PPGGCRAVSRDIRTTTEARRPGTARN 221
           PP         + T++E R+PG A N
Sbjct: 492 PPYRLNKPLMSLITSSEVRQPGKAPN 517


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 208 KPTELSACCRERSETPRHRNKPSRPVWSRRSPHH 107
           KPT L A   E+    RH  +  +   + R  H+
Sbjct: 140 KPTPLGAVATEKMFVARHLAETPKNTSAVRYTHY 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,695
Number of Sequences: 438
Number of extensions: 1957
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)