Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304F01f
(310 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g12450.1 68417.m01970 expressed protein 31 0.21
At1g27060.1 68414.m03299 regulator of chromosome condensation (R... 29 0.48
At4g11610.1 68417.m01859 C2 domain-containing protein contains I... 27 1.9
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 27 2.6
At2g07630.1 68415.m00881 hypothetical protein 27 2.6
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 27 2.6
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P... 27 3.4
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to... 27 3.4
At1g55610.1 68414.m06365 protein kinase family protein contains ... 26 4.5
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 26 4.5
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 26 5.9
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 26 5.9
At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to hi... 26 5.9
At4g18160.1 68417.m02698 outward rectifying potassium channel, p... 26 5.9
At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin... 26 5.9
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin... 26 5.9
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 26 5.9
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 26 5.9
At1g14500.1 68414.m01719 ankyrin repeat family protein contains ... 26 5.9
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 25 7.8
At4g15545.1 68417.m02375 expressed protein 25 7.8
At3g56720.1 68416.m06309 expressed protein 25 7.8
>At4g12450.1 68417.m01970 expressed protein
Length = 277
Score = 30.7 bits (66), Expect = 0.21
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -1
Query: 298 PPGGCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRR 119
P CR RD+ T +PGT + +P P+ C R E + + P+R S R
Sbjct: 32 PSYSCRKNVRDVVNT----QPGTVKKNPKPDPSLRRLCSSRRPELDSNSHHPTRRSVSAR 87
Query: 118 S 116
+
Sbjct: 88 A 88
>At1g27060.1 68414.m03299 regulator of chromosome condensation
(RCC1) family protein low similiarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 386
Score = 29.5 bits (63), Expect = 0.48
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 233 AWAPGLCGGPDVPAHGSAPA 292
+W G CGGPDV A S P+
Sbjct: 229 SWGRGFCGGPDVHAPQSLPS 248
>At4g11610.1 68417.m01859 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1011
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Frame = -3
Query: 302 HPSGRVQS-----REQGHQDHHRGPAPRHSEKHSASEADRAERLL 183
HP G QS + H +HH P+H SE R +L+
Sbjct: 184 HPQGPNQSSSLAAEQDNHNEHHHHYVPKHQVDEMRSEPARPSKLV 228
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 269 GHQDHHRGPAPRHSEKHSASEADRAERLL 183
GH DH G HS H S +RAE+LL
Sbjct: 157 GH-DHGHGHDHGHSHDHGHSYGERAEQLL 184
>At2g07630.1 68415.m00881 hypothetical protein
Length = 458
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 61 QQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSA-LSASDAECFS 228
Q L C + +K Y + DS++ + YS + + + P SKRS+ S S A+ FS
Sbjct: 369 QYLVCVENENKRYQMH--DSIDQCSLMLTYSEEPSEATTPSSKRSSDTSISPADNFS 423
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -1
Query: 250 EARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHHFHCSI 92
E +R + R P S +ER+ P+ ++ +R RR HH SI
Sbjct: 418 ERKRALEIKRDRTPTARATSKDTKERTPVPKSISRDARSSSLRRDAHHREASI 470
>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28270, At2g05450,
At1g45090, At2g16180, At2g06750
Length = 1224
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 251 RGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 150
R P+P H +H + E+LLP + P+ E
Sbjct: 681 RVPSPSHQPEHGIPDGGNFEQLLPDPILSDPALE 714
>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1210
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 251 RGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 150
R P+P H +H + E+LLP + P+ E
Sbjct: 672 RVPSPSHQPEHGIPDGGNFEQLLPDPILSDPALE 705
>At1g55610.1 68414.m06365 protein kinase family protein contains
Prosite:PS00107: Protein kinases ATP-binding region
signature
Length = 1166
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/31 (54%), Positives = 18/31 (58%)
Frame = +2
Query: 203 RLRTPSVSRCAWAPGLCGGPDVPAHGSAPAR 295
+L T VSR A GLCG P P GSAP R
Sbjct: 732 QLTTFPVSRYANNSGLCGVPLRPC-GSAPRR 761
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = -1
Query: 244 RRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHH 107
RR + R P+ R ETPR WSR+ HH
Sbjct: 300 RREASNELNRTPRKQVQKKSALLRLETPRSYKNSRENEWSRQHNHH 345
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 283 RAVSRDIRTTTEARRPGTARNTRRPKPTELSACCR--ERSETPRHRNKPSRPVWSRRSP 113
R+ SR + + R P ++ + E+S R ERS +PR P P + SP
Sbjct: 206 RSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASP 264
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 283 RAVSRDIRTTTEARRPGTARNTRRPKPTELSACCR--ERSETPRHRNKPSRPVWSRRSP 113
R+ SR + + R P ++ + E+S R ERS +PR P P + SP
Sbjct: 206 RSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASP 264
>At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to
histidine kinase AHK2 [Arabidopsis thaliana]
gi|13537196|dbj|BAB40774
Length = 1176
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 67 LNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPG 183
+ SS S+ Y G G+ +K++ ++ G+ +S PG
Sbjct: 816 MQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPG 854
>At4g18160.1 68417.m02698 outward rectifying potassium channel,
putative (KCO6) similar to kco1 [Arabidopsis thaliana]
gi|2230761|emb|CAA69158; member of the 2 pore, 4
transmembrane (2P/4TM) K+ channel family, PMID:11500563
Length = 436
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +3
Query: 189 ALSSVGFGRRVFLAVPGRR-ASVVVLMSLL 275
++++VG+G R F +PGR A++ +L+S L
Sbjct: 310 SVTTVGYGDRAFKTLPGRLFAAIWLLVSTL 339
>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = -3
Query: 302 HPSGRVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLL 183
H G + H DH G + H E + D E+LL
Sbjct: 201 HSHGVTVTTHHHHHDHEHGHSHGHGEDKHHAHGDVTEQLL 240
>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = -3
Query: 302 HPSGRVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLL 183
H G + H DH G + H E + D E+LL
Sbjct: 201 HSHGVTVTTHHHHHDHEHGHSHGHGEDKHHAHGDVTEQLL 240
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 181 RERSETPRHRNKPSRPVWSRRSPHH 107
R RS +P +R +PS RRSP +
Sbjct: 154 RRRSPSPVYRRRPSPDYTRRRSPEY 178
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 181 RERSETPRHRNKPSRPVWSRRSPHH 107
R RS +P +R +PS RRSP +
Sbjct: 180 RRRSPSPVYRRRPSPDYTRRRSPEY 204
>At1g14500.1 68414.m01719 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 436
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 210 GRRVFLAVPGRRASVVVLMSLLTALHPPGGV 302
GR VFL + ++++ + TAL PPGGV
Sbjct: 289 GRAVFLII----CTLILTSTYQTALQPPGGV 315
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 272 QGHQDHHRGPAPRHSEKHSASE 207
+G QD GP+ H EK S +E
Sbjct: 764 KGDQDQAHGPSDTHPEKRSPTE 785
>At4g15545.1 68417.m02375 expressed protein
Length = 337
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 236 RHSEKHSASEADRAERLLPGALRDAPSPE*TFSTCLVSTESTP 108
RHS S ++ E DAP P + S LVS +TP
Sbjct: 168 RHSSIQSQQASEAIEPAATDNENDAPKPSLSASLPLVSQTTTP 210
>At3g56720.1 68416.m06309 expressed protein
Length = 386
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Frame = -1
Query: 259 TTTEARRP---GTARNTRRPKPTELSACC------RERSETPRHRNKPSRPVWSRR 119
TTT R+P GT+R RR + + R +S P+H K S PV R+
Sbjct: 16 TTTAFRKPSNDGTSRKYRRRALADDGSSSSDGSPERNQSPNPKHSRKDSEPVHVRK 71
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,353,244
Number of Sequences: 28952
Number of extensions: 141851
Number of successful extensions: 535
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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